Hg_chrom3_TN10mRNA_5929
Organism: Heterodera glycines Gene Locus: chr3:8170356-8171216 Feature type: polypeptideProtein Sequence
Length: 174
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.401 | 0.668 | 1.045 | 1.189 | 1.054 | 1.032 | 0.958 | 1.437 | 2.427 | 0.854 | 0.958 | 1.69 | 1.756 | 1.105 | 0.586 | 0.575 | 0.942 | 1.219 | 0.0 | 1.183 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5635
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.780
|
0.285
|
0.006
|
0.387
|
0.116
|
0.067
|
0.036
|
0.041
|
0.203
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
P62487.1 DNA-directed RNA polymerase II subunit RPB7 [Homo sapiens]
|
KAH7722322.1 polymerase [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0006351|GO:0006352
|
GO:0005575_0.825|GO:0110165_0.776|GO:0005622_0.687|GO:0016020_0.672|GO:0043226_0.631|GO:0043227_0.607|GO:0043229_0.605|GO:0043231_0.597|GO:0008150_0.567
|
IPR003029+79-158_80-162+|IPR005576+9-64+|IPR012340+78-169_81-171+|IPR036898+1-78_1-80+|IPR045113+1-172+
|
SM00316+80-162+
|
PF00575+79-158+S1_RNA_binding_domain|PF03876+9-64+SHS2_domain_found_in_N_terminus_of_Rpb7p/Rpc25p/MJ0397
|
G3DSA:2.40.50.140:FF:000043+81-171+DNA-directed_RNA_polymerase_II_subunit_RPB7|G3DSA:3.30.1490.120:FF:000001+1-80+DNA-directed_RNA_polymerase_II_subunit_RPB7
|
PTHR12709+1-172+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-174
|
9vd9_k
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
19568.740
|
5.585
|
-2.500
|
24.138
|
13.218
|
40.805
|
59.195
|
12.069
|
12.069
|
47.126
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.