Hg_chrom3_TN10mRNA_5932
Organism: Heterodera glycines Gene Locus: chr3:8183195-8190027 Feature type: polypeptideProtein Sequence
Length: 788
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.959 | 1.121 | 1.061 | 0.306 | 1.29 | 2.278 | 0.68 | 1.142 | 0.536 | 1.2 | 0.769 | 1.717 | 1.022 | 1.196 | 1.269 | 1.251 | 0.978 | 0.596 | 1.074 | 0.037 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5638
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.843
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRRKR,PFKKRRK,KKQRPNQKHQQRRRVS,RRPSKKQRPNQKHQQRRRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.910
|
0.121
|
0.018
|
0.392
|
0.064
|
0.045
|
0.066
|
0.056
|
0.039
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007953
|
1.000
|
1.000
|
Hsc_gene_95.t1
|
Hsc_gene_95.t1
|
— |
P41934.1 Homeobox protein ceh-18 [Caenorhabditis elegans]
|
XP_042938734.1 Pou domain - N-terminal to homeobox domain containing protein [Brugia malayi];CDP97490.1 Bm7341, isoform d [Brugia malayi];VIO99910.1 Pou domain - N-terminal to homeobox domain containing protein [Brugia malayi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0003700|GO:0006355
|
GO:0008150_0.966|GO:0009987_0.882|GO:0065007_0.875|GO:0050789_0.860|GO:0050794_0.828|GO:0003674_0.799|GO:0005575_0.799|GO:0110165_0.791|GO:0005488_0.790|GO:0005622_0.763|GO:0043226_0.732|GO:0043229_0.716|GO:0097159_0.714|GO:0003676_0.700|GO:0016020_0.696|GO:0032502_0.672|GO:0008152_0.657|GO:0019222_0.657|GO:0043170_0.654|GO:0048856_0.649|GO:0003677_0.648|GO:0009058_0.647|GO:0009059_0.647|GO:0044237_0.647|GO:0044249_0.647|GO:0031323_0.642|GO:0010467_0.641|GO:0060255_0.635|GO:0043227_0.631|GO:0009889_0.618|GO:0010468_0.618|GO:0010556_0.618|GO:0031326_0.618|GO:0043565_0.618|GO:0044238_0.612|GO:0043231_0.611|GO:0006139_0.607|GO:0090304_0.607|GO:0034654_0.602|GO:0080090_0.602|GO:0016070_0.599|GO:0032501_0.594|GO:0032774_0.592|GO:0141187_0.592|GO:0005634_0.582|GO:0019219_0.572|GO:0051252_0.570|GO:0006351_0.564|GO:0006355_0.560|GO:2001141_0.560|GO:0048518_0.552|GO:0030154_0.541|GO:0048869_0.541|GO:0048522_0.519
|
IPR000327+592-666_596-666_634-647+|IPR001356+728-788_730-788_731-787+|IPR009057+718-787+|IPR010982+596-666_597-666+|IPR013847+611-628_634-647_650-665_764-779+|IPR017970+763-786+|IPR050255+317-787+
|
SM00352+592-666+|SM00389+730-788+
|
PF00046+731-787+Homeodomain|PF00157+596-666+Pou_domain_-_N-terminal_to_homeobox_domain
|
G3DSA:1.10.260.40:FF:000001+596-666+POU_domain_protein
|
PTHR11636+317-787+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-229;367-605
|
2.000
|
230-366;606-788
|
9dzm_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
87811.770
|
5.673
|
-9.000
|
27.157
|
7.487
|
55.584
|
44.416
|
13.579
|
13.579
|
50.381
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
3145.228
|
13035.413
|
4213.953
|
2350.083
|
2134.244
|
3778.975
|
1814.279
|
4962.398
|
1635.770
|
425.039
|
943.924
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.858
|
-2.609
|
-0.734
|
-0.171
|
0.840
|
-1.049
|
— |
-1.312
|
— | — |
3.017
|
— | — |
No JSON data available for plots.