Hg_chrom3_TN10mRNA_5934
Organism: Heterodera glycines Gene Locus: chr3:8197854-8201114 Feature type: polypeptideProtein Sequence
Length: 592
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 0.825 | 0.799 | 0.349 | 1.408 | 1.126 | 0.784 | 1.267 | 0.863 | 1.438 | 0.87 | 1.192 | 1.032 | 1.234 | 1.413 | 1.207 | 0.858 | 1.203 | 0.52 | 0.248 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5640
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.904
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.393
|
0.210
|
0.010
|
0.727
|
0.074
|
0.174
|
0.189
|
0.032
|
0.102
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007954
|
1.000
|
1.000
|
Hsc_gene_100.t2
|
Hsc_gene_100.t1;Hsc_gene_100.t2
|
— |
Q69ZS7.2 HBS1-like protein [Mus musculus]
|
KAF7633929.1 Tr-type G domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.889|GO:0110165_0.882|GO:0008150_0.850|GO:0009987_0.781|GO:0005622_0.773|GO:0003674_0.728|GO:0065007_0.646|GO:0005737_0.641|GO:0005488_0.634|GO:0050789_0.627|GO:0050794_0.605|GO:0008152_0.544|GO:0044237_0.540|GO:0009058_0.506
|
IPR000795+150-376_153-369_154-167_213-221_234-244_250-261_294-303+|IPR009000+381-480+|IPR009001+489-590+|IPR027417+141-376_144-346+|IPR050100+153-589+
|
— |
PF00009+153-369+Elongation_factor_Tu_GTP_binding_domain|PF22594+490-589+GTP-eEF1A_C-terminal_domain-like
|
G3DSA:3.40.50.300:FF:000204+136-375+Translation_elongation_factor_Tu
|
PTHR23115+153-589+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-158
|
1.000
|
159-592
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
65570.800
|
7.362
|
6.500
|
28.041
|
7.770
|
49.662
|
50.338
|
15.203
|
12.838
|
50.169
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
yellow
|
1911.007
|
2331.734
|
2545.497
|
2170.101
|
2151.324
|
1951.368
|
3126.223
|
2082.619
|
1369.751
|
1198.768
|
1272.047
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.103
|
-0.241
|
-0.121
|
— |
-0.126
|
0.691
|
— |
0.730
|
— | — | — | — | — |
No JSON data available for plots.