Hg_chrom3_TN10mRNA_5935
Organism: Heterodera glycines Gene Locus: chr3:8201893-8203301 Feature type: polypeptideProtein Sequence
Length: 303
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.959 | 0.768 | 0.84 | 1.138 | 0.77 | 0.677 | 0.864 | 2.145 | 1.027 | 1.115 | 0.6 | 1.165 | 1.834 | 1.142 | 1.616 | 1.132 | 0.649 | 0.85 | 0.762 | 1.165 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5641
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KGRRRK
|
95-139
|
0.962
|
— | — | — | — |
0.000
|
— | — |
0.200
|
0.239
|
0.060
|
0.265
|
0.171
|
0.260
|
0.495
|
0.027
|
0.225
|
0.745
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007955
|
1.000
|
1.000
|
Hsc_gene_101.t1
|
Hsc_gene_101.t1;Hsc_gene_101.t2
|
— |
Q9XTR8.1 Lipase ZK262.3 [Caenorhabditis elegans]
|
KAI1730806.1 lipase (class 3) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629
|
GO:0003674_0.885|GO:0005575_0.861|GO:0110165_0.861|GO:0003824_0.787|GO:0005622_0.753|GO:0016020_0.748|GO:0043226_0.711|GO:0043229_0.699|GO:0016787_0.698|GO:0016788_0.666|GO:0052689_0.654|GO:0004806_0.650|GO:0016298_0.650|GO:0005737_0.576|GO:0043227_0.542|GO:0043231_0.528
|
IPR002921+52-192+|IPR029058+2-268_27-265+
|
— |
PF01764+52-192+Lipase_(class_3)
|
— |
PTHR45908+3-274+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
284-303
|
1.000
|
1-283
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.883
|
34133.030
|
8.765
|
14.500
|
25.413
|
15.842
|
43.234
|
56.766
|
16.172
|
9.241
|
50.165
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
305.983
|
412.081
|
392.805
|
169.697
|
130.816
|
113.574
|
292.724
|
376.852
|
357.201
|
362.568
|
360.268
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.299
|
-1.417
|
-1.102
|
-0.409
|
— |
1.377
|
1.632
|
— | — | — | — | — | — |
No JSON data available for plots.