Hg_chrom3_TN10mRNA_5936
Organism: Heterodera glycines Gene Locus: chr3:8203670-8204860 Feature type: polypeptideProtein Sequence
Length: 262
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 1.154 | 0.625 | 0.79 | 1.336 | 1.468 | 0.954 | 0.763 | 1.018 | 0.98 | 0.81 | 2.245 | 1.06 | 0.367 | 1.48 | 1.799 | 0.751 | 0.867 | 0.587 | 0.337 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5642
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
golgi_apparatus
|
— | — | — | — |
1-48
|
0.965
|
— | — |
0.000
|
— | — |
0.231
|
0.316
|
0.010
|
0.380
|
0.308
|
0.510
|
0.609
|
0.045
|
0.521
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007956
|
1.000
|
1.000
|
Hsc_gene_102.t1
|
Hsc_gene_102.t1
|
— |
Q9SID8.1 Ras-related protein RABH1d [Arabidopsis thaliana]
|
KAI1730804.1 ras family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.938|GO:0110165_0.938|GO:0005622_0.833|GO:0016020_0.794|GO:0008150_0.781|GO:0009987_0.735|GO:0071944_0.733|GO:0043226_0.723|GO:0005737_0.720|GO:0005886_0.709|GO:0043229_0.702|GO:0043227_0.653|GO:0043231_0.617|GO:0005773_0.529|GO:0071840_0.506|GO:0003674_0.502
|
IPR001806+35-262_43-203_44-207+|IPR005225+42-198+|IPR027417+37-245_41-207+
|
SM00173+43-207+|SM00174+44-207+|SM00175+43-207+|SM00176+47-250+
|
PF00071+43-203+Ras_family
|
G3DSA:3.40.50.300:FF:001462+37-230+Small_GTP-binding_protein,_putative
|
PTHR47978+39-223+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-42
|
1.000
|
43-262
|
1d5c_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.886
|
28861.530
|
8.245
|
5.000
|
25.573
|
7.252
|
53.435
|
46.565
|
14.122
|
11.450
|
50.763
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
823.258
|
1302.864
|
798.203
|
805.604
|
792.334
|
905.233
|
984.322
|
1472.061
|
755.072
|
387.719
|
545.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.937
|
-0.831
|
0.122
|
— |
0.207
|
— |
0.602
|
-0.440
|
— | — | — | — | — |
No JSON data available for plots.