SCN Proteipedia

Hg_chrom3_TN10mRNA_5937

Organism: Heterodera glycines Gene Locus: chr3:8205013-8210834 Feature type: polypeptide

Protein Sequence

Length: 1,126 (Signal peptide: 1-29)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.568	1.404	0.937	4.532	1.125	1.093	1.459	0.71	0.493	0.612	0.969	0.157	1.184	1.025	0.906	0.837	1.048	0.444	0.956	0.653	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5643	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	membrane_bound	signal_peptide\|transmembrane_domain	cell_membrane	—	—	—	—	—	—	1-29	0.919	1.000	1.000	1.000	0.161	0.022	0.006	0.252	0.127	0.447	0.254	0.034	0.907	0.161

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007957	1.000	1.000	Hsc_gene_103.t1	Hsc_gene_103.t1	—	Q9XWD6.1 Cell death abnormality protein 1 [Caenorhabditis elegans]	KAH7697441.1 CED-1 protein, partial [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005044\|GO:0005515	GO:0005575_0.847\|GO:0110165_0.847\|GO:0008150_0.842\|GO:0009987_0.777\|GO:0065007_0.740\|GO:0050789_0.732\|GO:0050794_0.709\|GO:0071944_0.685\|GO:0003674_0.666\|GO:0032502_0.660\|GO:0048856_0.660\|GO:0005488_0.621\|GO:0032501_0.586\|GO:0048518_0.580\|GO:0048522_0.566\|GO:0048513_0.527\|GO:0030154_0.526\|GO:0048869_0.526\|GO:0005515_0.509	IPR000742+119-147_158-190_198-233_201-237_221-232_244-276_246-276_264-275_287-318_329-361_373-407_418-452_460-495_463-495_483-494_506-538_526-537_549-585_569-580_592-624_612-623_680-713_701-712_721-757_724-757_745-756_759-801_812-845+\|IPR002049+163-202_206-245_249-288_249-292_292-330_334-374_378-419_423-464_423-470_430-462_511-550_554-593_597-636_685-725_685-729_734-769_773-813_773-817_817-857+\|IPR011489+40-118+\|IPR013111+202-232+\|IPR042635+567-690+	SM00180+163-202_206-245_249-288_292-330_334-374_378-419_423-464_511-550_554-593_597-636_685-725_734-769_773-813_817-857+\|SM00181+119-147_158-190_201-237_244-276_287-318_329-361_373-407_418-452_463-495_506-538_549-585_592-624_680-713_724-757_759-801_812-845+	PF00053+249-292_423-470_685-729_773-817+Laminin_EGF_domain\|PF07974+202-232+EGF-like_domain	G3DSA:2.170.300.10:FF:000002+458-583+Multiple_epidermal_growth_factor-like_domains_10\|G3DSA:2.170.300.10:FF:000041+129-236_264-361_362-454_656-759+Tyrosine_protein_kinase_receptor_tie-1,_putative	PTHR24043+567-690+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	938-1126	1.000	1-937	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.840	121564.130	6.094	-4.000	24.156	9.147	46.714	53.286	12.256	11.901	61.989

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	3100.913	5822.006	4037.825	2637.389	2783.648	3959.116	3460.110	7117.196	1668.114	1133.926	1362.864

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.757	-1.280	-0.506	—	0.523	-0.185	0.749	-0.902	—	—	—	—	—

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