Hg_chrom3_TN10mRNA_5941
Organism: Heterodera glycines Gene Locus: chr3:8219157-8221484 Feature type: polypeptideProtein Sequence
Length: 471
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 0.988 | 0.656 | 0.586 | 0.708 | 0.599 | 0.506 | 1.805 | 1.84 | 1.549 | 0.74 | 1.624 | 2.064 | 0.572 | 0.997 | 1.274 | 0.661 | 1.094 | 1.143 | 1.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5646
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.887
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — |
50-70
|
1.000
|
4-36
|
0.921
|
— | — |
0.000
|
— | — |
0.081
|
0.158
|
0.021
|
0.095
|
0.762
|
0.436
|
0.680
|
0.007
|
0.270
|
0.091
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007959
|
1.000
|
1.000
|
Hsc_gene_107.t1
|
Hsc_gene_107.t1;Hsc_gene_107.t2
|
— |
Q08BG1.1 Transmembrane protein with metallophosphoesterase domain [Danio rerio]
|
KAF7633938.1 Metallophos domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0003674_0.863|GO:0003824_0.749|GO:0016787_0.682|GO:0016788_0.661|GO:0042578_0.654|GO:0008081_0.650
|
IPR004843+240-410+|IPR029052+237-423_239-467+|IPR051158+203-469+
|
— |
PF00149+240-410+Calcineurin-like_phosphoesterase
|
— |
PTHR31302+203-469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-471
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.752
|
54198.300
|
8.985
|
17.500
|
21.231
|
17.622
|
40.764
|
59.236
|
13.376
|
7.856
|
43.524
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
762.168
|
1152.164
|
867.868
|
855.825
|
902.295
|
835.578
|
649.332
|
836.616
|
274.624
|
841.135
|
598.345
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.638
|
-0.566
|
— | — | — |
-0.357
|
— | — | — | — | — | — | — |
No JSON data available for plots.