Hg_chrom3_TN10mRNA_5942
Organism: Heterodera glycines Gene Locus: chr3:8221593-8223914 Feature type: polypeptideProtein Sequence
Length: 232
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.601 | 2.205 | 0.784 | 0.595 | 1.078 | 1.105 | 0.718 | 0.862 | 1.149 | 1.048 | 1.633 | 2.028 | 1.557 | 0.995 | 1.407 | 1.17 | 0.424 | 0.261 | 0.995 | 0.634 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5647
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKEKKRKRNVKT,KKSERSSALNIRRKRRPN
|
— | — |
23-49
|
0.984
|
— | — |
0.001
|
— | — |
0.929
|
0.076
|
0.004
|
0.206
|
0.041
|
0.017
|
0.048
|
0.010
|
0.031
|
0.073
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007960
|
2.000
|
0.000
|
0.000
|
— | — | — |
KAH7722288.1 PIN2/TERF1-interacting telomerase inhibitor 1 [Aphelenchus avenae]
|
No
|
-0.460
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676
|
GO:0005575_0.929|GO:0110165_0.929|GO:0005622_0.887|GO:0016020_0.869|GO:0043226_0.867|GO:0043229_0.867|GO:0043227_0.819|GO:0043231_0.812|GO:0008150_0.765|GO:0005634_0.724|GO:0009987_0.716|GO:0065007_0.678|GO:0050789_0.667|GO:0050794_0.656|GO:0071840_0.601|GO:0043228_0.588|GO:0043232_0.587|GO:0003674_0.551|GO:0044085_0.538|GO:0005488_0.533|GO:0008152_0.516|GO:0043170_0.516|GO:0031974_0.507|GO:0044238_0.506|GO:0009058_0.505|GO:0009059_0.505|GO:0044237_0.505|GO:0044249_0.505|GO:0043233_0.503
|
IPR000467+57-103_59-105_60-101+|IPR050656+42-228+
|
SM00443+57-103+
|
PF01585+60-101+G-patch_domain
|
— |
PTHR23149+42-228+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
116-232
|
1.000
|
1-115
|
8rdy_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.834
|
26768.550
|
10.432
|
18.000
|
30.172
|
10.776
|
54.741
|
45.259
|
19.397
|
10.776
|
44.397
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
471.827
|
688.941
|
398.768
|
411.539
|
408.437
|
338.169
|
473.716
|
391.894
|
509.176
|
515.563
|
512.826
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.018
|
-0.881
|
— | — |
-0.258
|
0.496
|
— |
0.415
|
— | — | — | — | — |
No JSON data available for plots.