SCN Proteipedia

Hg_chrom3_TN10mRNA_5944

Organism: Heterodera glycines Gene Locus: chr3:8224074-8226300 Feature type: polypeptide

Protein Sequence

Length: 487

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.194	0.907	0.896	0.496	1.061	0.895	1.076	1.027	1.323	1.276	0.996	2.295	1.369	0.75	0.838	0.968	0.471	0.964	1.264	0.604	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5648	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	2-pJ2_J3_J4_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	peroxisomal_targeting_signal	cytoplasm	—	KKPR,KKQRMDASKLLPKPSKK	—	—	—	—	—	—	0.000	—	—	0.282	0.420	0.287	0.677	0.206	0.353	0.227	0.317	0.217	0.211

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007961	1.000	1.000	Hsc_gene_108.t1	Hsc_gene_108.t1	—	Q17761.2 6-phosphogluconate dehydrogenase, decarboxylating [Caenorhabditis elegans]	KAF7633928.1 6-phosphogluconate dehydrogenase, decarboxylating [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004616\|GO:0006098\|GO:0050661	GO:0008150_0.917\|GO:0009987_0.785\|GO:0003674_0.759\|GO:0008152_0.699\|GO:0044237_0.666\|GO:0005575_0.661\|GO:0003824_0.656\|GO:0110165_0.654\|GO:0044238_0.604\|GO:0044281_0.557\|GO:0006139_0.539\|GO:0005622_0.537\|GO:1901135_0.533\|GO:0006793_0.525\|GO:0006796_0.524\|GO:0016491_0.517\|GO:0019637_0.517\|GO:0055086_0.512\|GO:0006753_0.511\|GO:0009117_0.506\|GO:0072521_0.506\|GO:0006091_0.504\|GO:0006163_0.504\|GO:0019362_0.502\|GO:0046496_0.502\|GO:0072524_0.502	IPR006113+1-482_7-474+\|IPR006114+182-473_182-474+\|IPR006115+7-172+\|IPR006183+6-29_6-474_69-98_122-147_171-199_252-279_362-384+\|IPR008927+180-477+\|IPR013328+184-440+\|IPR036291+6-176+	SM01350+182-474+	PF00393+182-473+6-phosphogluconate_dehydrogenase,_C-terminal_domain\|PF03446+7-172+NAD_binding_domain_of_6-phosphogluconate_dehydrogenase	G3DSA:1.10.1040.10:FF:000002+184-440+6-phosphogluconate_dehydrogenase,_decarboxylating\|G3DSA:1.20.5.320:FF:000002+441-487+6-phosphogluconate_dehydrogenase,_decarboxylating\|G3DSA:3.40.50.720:FF:000007+4-183+6-phosphogluconate_dehydrogenase,_decarboxylating	PTHR11811+6-474+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-487	2jkv_F	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.703	53352.540	6.820	2.000	24.025	10.678	41.068	58.932	12.731	11.294	49.487

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	magenta	darkred	4407.638	1138.019	1834.875	6069.127	13185.781	8359.042	4892.657	2361.339	786.723	4503.060	2910.344

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.460	2.278	1.834	1.087	-0.643	-0.762	-1.925	1.192	-2.640	3.122	1.792	—	—

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