Hg_chrom3_TN10mRNA_5949
Organism: Heterodera glycines Gene Locus: chr3:8234410-8237913 Feature type: polypeptideProtein Sequence
Length: 826
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.253 | 0.816 | 0.594 | 0.793 | 0.827 | 2.173 | 0.663 | 1.998 | 0.673 | 0.916 | 0.459 | 1.852 | 0.908 | 1.863 | 0.791 | 1.937 | 0.635 | 0.715 | 0.838 | 0.32 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5651
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.858
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRKKR
|
29-49
|
0.910
|
17-77
|
0.999
|
— | — |
0.000
|
— | — |
0.846
|
0.130
|
0.014
|
0.400
|
0.059
|
0.087
|
0.093
|
0.042
|
0.051
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001214
|
3.000
|
2.000
|
Hsc_gene_111.t1;Hsc_gene_111.t2
|
Hsc_gene_111.t1;Hsc_gene_111.t2
|
— |
P20268.3 Homeobox protein ceh-6 [Caenorhabditis elegans]
|
OZC06332.1 Pou domain - to homeobox domain protein [Onchocerca flexuosa]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000981|GO:0003677|GO:0003700|GO:0006355
|
GO:0008150_0.970|GO:0065007_0.916|GO:0009987_0.913|GO:0050789_0.907|GO:0050794_0.872|GO:0003674_0.803|GO:0005488_0.803|GO:0005575_0.799|GO:0110165_0.785|GO:0005622_0.741|GO:0097159_0.737|GO:0003676_0.727|GO:0008152_0.723|GO:0019222_0.723|GO:0031323_0.723|GO:0044237_0.723|GO:0043170_0.714|GO:0060255_0.714|GO:0032502_0.709|GO:0009058_0.701|GO:0009889_0.701|GO:0031326_0.701|GO:0044249_0.701|GO:0009059_0.700|GO:0010467_0.700|GO:0043226_0.697|GO:0010556_0.695|GO:0010468_0.694|GO:0044238_0.692|GO:0080090_0.692|GO:0043229_0.690|GO:0016020_0.684|GO:0003677_0.674|GO:0006139_0.665|GO:0016070_0.665|GO:0019219_0.665|GO:0032774_0.665|GO:0034654_0.665|GO:0048856_0.665|GO:0051252_0.665|GO:0090304_0.665|GO:0141187_0.665|GO:0043565_0.660|GO:2001141_0.652|GO:0032501_0.647|GO:0006351_0.646|GO:0006355_0.643|GO:0043227_0.594|GO:0043231_0.580|GO:0048518_0.575|GO:0005634_0.565|GO:0048522_0.544|GO:0007275_0.535|GO:0030154_0.528|GO:0048869_0.528|GO:0048731_0.520|GO:0003690_0.505|GO:1990837_0.505
|
IPR000327+562-636_567-635_604-617+|IPR001356+668-731_670-735_671-730_675-731+|IPR009057+670-740+|IPR010982+566-636_567-635+|IPR013847+581-598_604-617_620-635_707-722+|IPR017970+706-729+|IPR050255+243-777+
|
SM00352+562-636+|SM00389+670-735+
|
PF00046+671-730+Homeodomain|PF00157+567-635+Pou_domain_-_N-terminal_to_homeobox_domain
|
G3DSA:1.10.260.40:FF:000001+566-636+POU_domain_protein
|
PTHR11636+243-777+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-69;339-561;719-826
|
2.000
|
70-338;562-718
|
7xrc_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.888
|
88654.170
|
6.778
|
5.500
|
19.128
|
9.443
|
48.547
|
51.453
|
10.896
|
8.232
|
57.264
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
turquoise
|
367.374
|
314.321
|
474.956
|
262.764
|
409.829
|
246.607
|
60.556
|
1812.009
|
42.532
|
232.473
|
151.070
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.367
|
-0.396
|
-0.746
|
0.610
|
-0.718
|
-2.018
|
2.774
|
-4.762
|
— | — | — | — | — |
No JSON data available for plots.