SCN Proteipedia

Hg_chrom3_TN10mRNA_5950

Organism: Heterodera glycines Gene Locus: chr3:8238759-8244514 Feature type: polypeptide

Protein Sequence

Length: 772

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.054	0.753	1.083	0.134	1.943	1.229	0.416	1.295	1.007	1.278	1.492	1.295	0.612	0.897	1.798	0.759	0.892	0.51	1.196	0.419	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5652	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_Clustered	0.493

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	DDRRKDKDKLRKRKQ,RRAEGIDEADTMKEAKKLK,RRRDWQERDDRRKDKDKLR,RRDWQERDDRRKDKDKLRK,KRKQEDAPQSIFSEKHEKK,RKQEDAPQSIFSEKHEKKR,RRAALLAKKKELELQKRTR,KKEPTHLYTFEEREKARKM	—	—	—	—	—	—	0.000	—	—	0.800	0.067	0.019	0.290	0.027	0.029	0.022	0.007	0.071	0.020

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007964	1.000	1.000	Hsc_gene_112.t1	Hsc_gene_112.t1	—	Q99459.2 Cell division cycle 5-like protein [Homo sapiens]	KAI1709251.1 pre-mRNA splicing factor component domain-containing protein [Ditylenchus destructor]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398\|GO:0000974	GO:0008150_0.944\|GO:0009987_0.912\|GO:0005575_0.906\|GO:0110165_0.902\|GO:0005622_0.825\|GO:0043226_0.782\|GO:0008152_0.768\|GO:0043170_0.768\|GO:0043229_0.767\|GO:0016020_0.757\|GO:0065007_0.754\|GO:0009058_0.751\|GO:0044237_0.749\|GO:0009059_0.747\|GO:0010467_0.747\|GO:0044249_0.747\|GO:0050789_0.743\|GO:0006139_0.741\|GO:0044238_0.741\|GO:0090304_0.736\|GO:0034654_0.728\|GO:0050794_0.726\|GO:0141187_0.721\|GO:0016070_0.719\|GO:0032774_0.704\|GO:0003674_0.689\|GO:0005488_0.689\|GO:0043227_0.686\|GO:0043231_0.653\|GO:0005634_0.649\|GO:0019222_0.637\|GO:0060255_0.626\|GO:0031323_0.625\|GO:0009889_0.606\|GO:0031326_0.606\|GO:0080090_0.605\|GO:0010468_0.602\|GO:0010556_0.602\|GO:0019219_0.577\|GO:0051252_0.569\|GO:0006351_0.567\|GO:2001141_0.561\|GO:0050896_0.558\|GO:0006355_0.556\|GO:0032991_0.530\|GO:0005737_0.505	IPR001005+3-54_7-56_11-54_55-104_59-106+\|IPR009057+34-109+\|IPR017930+3-58_59-108+\|IPR021786+398-597+\|IPR047240+56-108+\|IPR047242+1-749+	SM00717+7-56_59-106+	PF11831+398-597+pre-mRNA_splicing_factor_component\|PF13921+11-71+Myb-like_DNA-binding_domain	G3DSA:1.10.10.60:FF:000021+6-60+CDC5_cell_division_cycle_5-like\|G3DSA:1.10.10.60:FF:000091+61-121+CDC5_cell_division_cycle_5-like	PTHR45885+1-749+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	112-505;754-772	2.000	1-111;506-753	3jb9_W	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.570	89329.310	9.360	18.000	38.860	7.772	57.642	42.358	21.244	17.617	40.933

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	2666.219	3259.922	2765.413	2996.568	3286.139	3015.704	2304.314	2327.573	3963.340	1208.840	2389.340

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.466	-0.259	0.224	0.101	—	-0.377	-0.479	—	—	—	—	—	—

No JSON data available for plots.

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