Hg_chrom3_TN10mRNA_5959
Organism: Heterodera glycines Gene Locus: chr3:8270525-8273714 Feature type: polypeptideProtein Sequence
Length: 554
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.63 | 1.091 | 0.689 | 0.311 | 1.233 | 0.741 | 0.559 | 1.173 | 1.284 | 1.586 | 1.012 | 1.487 | 1.805 | 1.076 | 1.474 | 1.238 | 0.71 | 0.82 | 0.972 | 0.637 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5660
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
1-21
|
0.999
|
16-83
|
0.991
|
— | — |
0.009
|
— | — |
0.165
|
0.907
|
0.088
|
0.280
|
0.180
|
0.096
|
0.100
|
0.138
|
0.096
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001970
|
3.000
|
1.000
|
Hsc_gene_48.t1
|
Hsc_gene_48.t1
|
— |
Q5SNQ7.1 Protein SERAC1 [Danio rerio]
|
KAI1730826.1 PGAP1-like protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.940|GO:0005575_0.920|GO:0110165_0.919|GO:0009987_0.893|GO:0071944_0.716|GO:0005622_0.606|GO:0016020_0.584|GO:0043226_0.570|GO:0043229_0.556|GO:0005737_0.548|GO:0043227_0.521
|
IPR016024+175-284+|IPR029058+302-478_308-438+|IPR052374+286-539+
|
— | — | — |
PTHR48182+286-539+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
554-554
|
1.000
|
1-553
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.870
|
63613.580
|
9.920
|
21.500
|
27.437
|
12.274
|
48.014
|
51.986
|
16.245
|
11.191
|
43.502
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
403.779
|
102.850
|
90.117
|
71.569
|
67.935
|
53.536
|
97.271
|
150.455
|
165.875
|
1404.476
|
873.647
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.422
|
-0.660
|
— | — | — |
0.870
|
1.386
|
-0.489
|
— | — |
-2.867
|
— | — |
No JSON data available for plots.