Hg_chrom3_TN10mRNA_5963
Organism: Heterodera glycines Gene Locus: chr3:8306964-8307312 Feature type: polypeptideProtein Sequence
Length: 99
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.352 | 1.175 | 0.735 | 1.045 | 1.178 | 1.036 | 0.361 | 1.515 | 1.796 | 1.638 | 0.918 | 2.377 | 2.525 | 0.389 | 1.649 | 1.154 | 0.331 | 0.459 | 0.0 | 1.485 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5664
|
— | — |
2.000
|
3.000
|
3.000
|
2.000
|
1.000
|
1.000
|
3.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|nucleus
|
— |
KRLMQKAQSQFQIKSRRY
|
— | — | — | — | — | — |
0.000
|
— | — |
0.544
|
0.299
|
0.028
|
0.647
|
0.225
|
0.071
|
0.100
|
0.352
|
0.040
|
0.238
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001215
|
4.000
|
1.000
|
Hsc_gene_21162.t1
|
— | — | — |
XP_030008124.1 zinc finger BED domain-containing protein 4-like [Sphaeramia orbicularis]
|
No
|
-0.880
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR052035+2-52+
|
— | — | — |
PTHR46481+2-52+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-99
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
11907.890
|
8.700
|
4.500
|
28.283
|
17.172
|
47.475
|
52.525
|
17.172
|
11.111
|
33.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
92.507
|
34.535
|
84.621
|
35.954
|
28.322
|
22.942
|
14.386
|
32.069
|
85.946
|
245.449
|
177.091
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.060
|
— |
-1.124
|
— | — |
-0.666
|
— |
-1.016
|
— | — | — | — | — |
No JSON data available for plots.