Hg_chrom3_TN10mRNA_5965
Organism: Heterodera glycines Gene Locus: chr3:8315150-8320882 Feature type: polypeptideProtein Sequence
Length: 887
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.905 | 0.76 | 0.758 | 0.505 | 0.582 | 0.694 | 0.55 | 1.578 | 1.253 | 2.087 | 0.478 | 0.995 | 2.411 | 0.715 | 0.943 | 1.417 | 0.702 | 1.264 | 1.301 | 0.63 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5665
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.883
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
1-25
|
1.000
|
— | — | — | — |
0.002
|
— | — |
0.142
|
0.098
|
0.012
|
0.133
|
0.780
|
0.329
|
0.482
|
0.149
|
0.223
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007968
|
1.000
|
1.000
|
Hsc_gene_113.t2
|
Hsc_gene_113.t1;Hsc_gene_113.t2
|
— |
Q8TEQ8.3 GPI ethanolamine phosphate transferase 3 [Homo sapiens]
|
KAI1709253.1 type I phosphodiesterase / nucleotide pyrophosphatase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006506|GO:0016772|GO:0051377
|
GO:0005575_0.862|GO:0110165_0.862|GO:0016020_0.827|GO:0071944_0.725|GO:0005886_0.723|GO:0008150_0.671|GO:0005622_0.642|GO:0005737_0.642|GO:0003674_0.637|GO:0009987_0.616|GO:0043226_0.591|GO:0043227_0.585|GO:0043229_0.580|GO:0005773_0.574|GO:0043231_0.574|GO:0012505_0.551|GO:0003824_0.512
|
IPR002591+198-279+|IPR017850+46-335_65-334+|IPR037675+61-336+|IPR039524+9-879+
|
— |
PF01663+198-279+Type_I_phosphodiesterase_/_nucleotide_pyrophosphatase
|
— |
PTHR23071+9-879+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-887
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.680
|
99480.280
|
7.723
|
15.000
|
18.602
|
15.671
|
38.782
|
61.218
|
10.936
|
7.666
|
47.576
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1934.998
|
3244.246
|
1439.872
|
1333.167
|
1304.808
|
1240.988
|
1910.022
|
1217.927
|
567.986
|
3655.492
|
2332.276
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.402
|
-1.420
|
— | — | — |
0.631
|
— |
0.789
|
-2.815
|
— | — | — | — |
No JSON data available for plots.