Hg_chrom3_TN10mRNA_5966
Organism: Heterodera glycines Gene Locus: chr3:8322984-8326652 Feature type: polypeptideProtein Sequence
Length: 432
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.619 | 0.915 | 0.758 | 0.798 | 1.157 | 1.009 | 1.047 | 2.083 | 0.772 | 1.251 | 1.052 | 1.362 | 1.157 | 0.846 | 1.512 | 0.827 | 1.1 | 0.737 | 0.356 | 1.362 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5666
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cell_membrane
|
— |
RRRK,RRRR
|
— | — |
9-35
|
0.984
|
— | — |
0.000
|
— | — |
0.431
|
0.267
|
0.003
|
0.335
|
0.106
|
0.174
|
0.184
|
0.018
|
0.705
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007969
|
1.000
|
1.000
|
Hsc_gene_114.t1
|
Hsc_gene_114.t1;Hsc_gene_114.t2
|
— |
Q8WQ99.1 Casein kinase I gamma [Caenorhabditis elegans]
|
KAI3420287.1 Casein kinase I gamma [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.792|GO:0110165_0.792|GO:0003674_0.764|GO:0003824_0.712|GO:0005622_0.707|GO:0140096_0.690|GO:0016740_0.687|GO:0008150_0.663|GO:0016772_0.612|GO:0016301_0.591|GO:0016773_0.584|GO:0005737_0.579|GO:0004672_0.573|GO:0009987_0.551|GO:0016020_0.514
|
IPR000719+28-242_28-306_28-312+|IPR008271+143-155+|IPR011009+24-311+|IPR017441+34-57+|IPR050235+27-384+
|
SM00220+28-312+
|
PF00069+28-242+Protein_kinase_domain
|
G3DSA:1.10.510.10:FF:000703+2-350+Casein_kinase_I_gamma
|
PTHR11909+27-384+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-8;310-432
|
1.000
|
9-309
|
6gro_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
49083.820
|
9.369
|
23.000
|
29.630
|
13.426
|
50.000
|
50.000
|
18.519
|
11.111
|
46.296
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
3234.099
|
6212.757
|
2868.038
|
2272.537
|
2019.805
|
2623.429
|
2890.976
|
4348.660
|
3809.674
|
2578.349
|
3106.060
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.344
|
-1.588
|
-0.227
|
-0.202
|
0.392
|
0.150
|
0.627
|
-0.448
|
— | — | — | — | — |
No JSON data available for plots.