SCN Proteipedia

Hg_chrom3_TN10mRNA_5967

Organism: Heterodera glycines Gene Locus: chr3:8332492-8334646 Feature type: polypeptide

Protein Sequence

Length: 336

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.658	1.73	0.812	0.513	1.141	1.45	0.602	1.339	1.058	1.126	0.902	1.751	1.819	0.973	0.972	1.063	0.439	1.172	0.916	0.963	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5667	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	5-pJ2_J3_J4	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	RRLTQIMSRPNDNVKPSRR	—	—	—	—	—	—	0.000	—	—	0.647	0.157	0.016	0.527	0.061	0.050	0.045	0.009	0.149	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007970	1.000	1.000	Hsc_gene_115.t1	Hsc_gene_115.t1	—	—	KAF7634084.1 RRM domain-containing protein [Meloidogyne graminicola]	MCL1804951	0.110

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676	GO:0008150_0.935\|GO:0005575_0.884\|GO:0110165_0.884\|GO:0009987_0.874\|GO:0005622_0.850\|GO:0065007_0.822\|GO:0008152_0.813\|GO:0050789_0.804\|GO:0043226_0.799\|GO:0050794_0.793\|GO:0016020_0.789\|GO:0044238_0.789\|GO:0043229_0.788\|GO:0005737_0.786\|GO:0044237_0.784\|GO:0009058_0.782\|GO:0043170_0.778\|GO:0043227_0.762\|GO:0044249_0.760\|GO:0009059_0.752\|GO:0043231_0.742\|GO:0006139_0.740\|GO:0010467_0.739\|GO:0019222_0.736\|GO:0031323_0.736\|GO:0048518_0.734\|GO:0048522_0.729\|GO:0060255_0.729\|GO:0090304_0.728\|GO:0034654_0.725\|GO:0048519_0.721\|GO:0009889_0.718\|GO:0031326_0.717\|GO:0141187_0.716\|GO:0010468_0.715\|GO:0010556_0.715\|GO:0016070_0.715\|GO:0048523_0.710\|GO:0032774_0.709\|GO:0009892_0.693\|GO:0010605_0.688\|GO:0031324_0.688\|GO:0007049_0.684\|GO:0009890_0.684\|GO:0022402_0.684\|GO:0031327_0.684\|GO:0010558_0.683\|GO:0006396_0.681\|GO:0010629_0.680\|GO:0051301_0.679\|GO:0051726_0.679\|GO:0010564_0.676\|GO:0007059_0.675\|GO:0031047_0.670\|GO:0034587_0.670\|GO:0045787_0.670\|GO:0051302_0.670\|GO:0051781_0.670\|GO:0051983_0.670\|GO:0051984_0.670\|GO:0070918_0.670\|GO:0090068_0.670\|GO:0005634_0.650\|GO:0032991_0.638\|GO:0140535_0.559\|GO:0048471_0.546\|GO:0034518_0.540	IPR035979+236-316+	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-336	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.747	38517.850	6.957	2.500	24.702	13.690	47.917	52.083	13.393	11.310	47.024

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	1285.203	1654.910	1541.520	1779.032	1957.410	1787.349	1651.720	1756.496	662.297	577.878	614.058

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.332	—	0.315	0.106	—	—	—	—	—	—	—	—	—

No JSON data available for plots.

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