Hg_chrom3_TN10mRNA_5968
Organism: Heterodera glycines Gene Locus: chr3:8336182-8338261 Feature type: polypeptideProtein Sequence
Length: 320
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.908 | 1.308 | 0.966 | 0.862 | 1.042 | 0.401 | 0.707 | 1.406 | 1.736 | 1.689 | 0.616 | 0.184 | 1.215 | 1.022 | 1.531 | 1.116 | 0.717 | 0.71 | 0.962 | 0.643 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5668
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRDKKSGIIIERKLRVK
|
— | — |
33-56
|
0.999
|
— | — |
0.002
|
— | — |
0.088
|
0.021
|
0.004
|
0.267
|
0.337
|
0.430
|
0.294
|
0.021
|
0.859
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007971
|
1.000
|
1.000
|
Hsc_gene_116.t1
|
Hsc_gene_116.t1
|
— |
A4IGL7.1 Peroxidasin [Xenopus tropicalis]
|
KAI1709259.1 immunoglobulin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.846|GO:0110165_0.820|GO:0008150_0.812|GO:0009987_0.731|GO:0016020_0.612|GO:0071944_0.602|GO:0032501_0.553|GO:0005886_0.532|GO:0065007_0.515
|
IPR003598+195-259+|IPR003599+72-168_189-272+|IPR007110+169-268+|IPR013098+190-264+|IPR013783+185-269+|IPR036179+190-260+|IPR051275+77-314+
|
SM00408+195-259+|SM00409+72-168_189-272+
|
PF07679+190-264+Immunoglobulin_I-set_domain
|
— |
PTHR11640+77-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
320-320
|
1.000
|
1-319
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.770
|
35750.960
|
7.393
|
4.500
|
25.938
|
10.625
|
45.312
|
54.688
|
14.375
|
11.562
|
49.375
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
1141.753
|
2338.938
|
1644.307
|
808.293
|
701.221
|
786.327
|
638.718
|
867.559
|
1697.768
|
802.334
|
1186.091
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.738
|
-1.670
|
-0.916
|
-0.237
|
0.180
|
-0.290
|
— |
-0.301
|
— | — | — | — | — |
No JSON data available for plots.