Hg_chrom3_TN10mRNA_5969
Organism: Heterodera glycines Gene Locus: chr3:8339816-8341024 Feature type: polypeptideProtein Sequence
Length: 180
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 0.904 | 0.808 | 0.192 | 1.296 | 1.709 | 0.728 | 1.667 | 1.235 | 1.126 | 1.347 | 2.288 | 0.617 | 2.137 | 0.567 | 1.429 | 0.729 | 0.421 | 0.0 | 0.163 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5669
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.600
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — |
33-54
|
0.986
|
— | — |
0.000
|
— | — |
0.400
|
0.244
|
0.029
|
0.729
|
0.109
|
0.138
|
0.349
|
0.026
|
0.250
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007972
|
1.000
|
1.000
|
Hsc_gene_117.t1
|
Hsc_gene_117.t1
|
— | — |
KAI1709260.1 cAMP-regulated phosphoprotein/endosulfine conserved region domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.933|GO:0110165_0.928|GO:0008150_0.924|GO:0005622_0.893|GO:0016020_0.677|GO:0043226_0.664|GO:0009987_0.651|GO:0043229_0.650|GO:0043227_0.634|GO:0003674_0.614|GO:0005488_0.614|GO:0043231_0.598|GO:0050896_0.589|GO:0005515_0.578|GO:0005634_0.566
|
IPR006760+7-155_34-84+
|
— |
PF04667+34-84+cAMP-regulated_phosphoprotein/endosulfine_conserved_region
|
— |
PTHR10358+7-155+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-180
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.893
|
19634.320
|
7.064
|
2.000
|
27.222
|
6.111
|
52.222
|
47.778
|
15.000
|
12.222
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
lightcyan
|
2105.112
|
1187.656
|
2217.347
|
1694.855
|
1863.807
|
1978.392
|
2050.197
|
3586.396
|
2131.979
|
2143.886
|
2138.783
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
0.376
|
-0.279
|
0.105
|
— | — |
0.754
|
-0.664
|
— | — | — | — | — |
No JSON data available for plots.