Hg_chrom3_TN10mRNA_5970
Organism: Heterodera glycines Gene Locus: chr3:8343034-8344487 Feature type: polypeptideProtein Sequence
Length: 271
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.944 | 0.858 | 0.738 | 0.891 | 1.476 | 1.892 | 0.439 | 1.107 | 1.394 | 1.895 | 0.783 | 1.954 | 0.82 | 0.781 | 0.904 | 0.949 | 0.665 | 1.006 | 0.568 | 0.326 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5670
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.189
|
0.086
|
0.030
|
0.325
|
0.401
|
0.694
|
0.421
|
0.029
|
0.598
|
0.316
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007973
|
1.000
|
1.000
|
Hsc_gene_118.t1
|
Hsc_gene_118.t1
|
— |
Q6INX1.1 Transmembrane protein 98 [Xenopus laevis]
|
KAI1709261.1 transmembrane protein 98 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.946|GO:0110165_0.941|GO:0016020_0.885|GO:0005886_0.879|GO:0071944_0.879|GO:0005622_0.846|GO:0043226_0.790|GO:0005737_0.787|GO:0043229_0.773|GO:0043227_0.740|GO:0043231_0.709|GO:0005773_0.699|GO:0012505_0.699|GO:0008150_0.621|GO:0005576_0.595|GO:0005615_0.595|GO:0009987_0.590|GO:0065007_0.582|GO:0005783_0.578|GO:0050789_0.566|GO:0050794_0.543|GO:0051179_0.515|GO:0050896_0.509
|
IPR029668+1-219+
|
— | — | — |
PTHR32510+1-219+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
191-271
|
1.000
|
1-190
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.687
|
30410.270
|
5.046
|
-6.000
|
24.723
|
7.011
|
46.494
|
53.506
|
11.808
|
12.915
|
43.542
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
465.916
|
469.276
|
604.404
|
610.301
|
619.204
|
600.090
|
1131.336
|
802.410
|
168.373
|
98.220
|
128.286
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.242
|
— | — | — |
0.924
|
0.315
|
0.637
|
— | — |
3.494
|
— | — |
No JSON data available for plots.