Hg_chrom3_TN10mRNA_5972
Organism: Heterodera glycines Gene Locus: chr3:8345744-8348643 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.358 | 1.252 | 0.979 | 1.061 | 1.581 | 1.446 | 0.824 | 0.513 | 1.083 | 1.04 | 0.971 | 0.905 | 1.211 | 1.233 | 1.465 | 1.282 | 0.925 | 0.544 | 1.381 | 0.452 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5672
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRVSKFLRSLSSTRRRRQA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.916
|
0.083
|
0.018
|
0.272
|
0.040
|
0.015
|
0.012
|
0.166
|
0.019
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007974
|
1.000
|
1.000
|
Hsc_gene_119.t1
|
— | — | — |
KAI1720022.1 recQ mediated genome instability protein domain-containing protein [Ditylenchus destructor]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.947|GO:0050896_0.844|GO:0005575_0.747|GO:0110165_0.747|GO:0005622_0.690|GO:0009987_0.683|GO:0016020_0.651|GO:0043226_0.634|GO:0043229_0.618|GO:0051716_0.593|GO:0008152_0.586|GO:0043170_0.586|GO:0043227_0.586|GO:0043231_0.573|GO:0044238_0.549|GO:0032501_0.548|GO:0006139_0.540|GO:0090304_0.535|GO:0005634_0.532|GO:0032502_0.527|GO:0006950_0.521
|
IPR013894+72-178+|IPR042470+61-185+|IPR049363+14-56+
|
SM01161+9-95+
|
PF08585+72-178+RMI1,_N-terminal_OB-fold_domain|PF21000+14-56+RMI1,_N-terminal_helical_domain
|
— |
PTHR14790+6-364+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
199-390
|
1.000
|
1-198
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
44388.720
|
5.618
|
-3.000
|
29.487
|
8.718
|
55.128
|
44.872
|
14.615
|
14.872
|
48.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightcyan
|
801.034
|
1231.410
|
928.031
|
747.987
|
731.411
|
714.169
|
772.895
|
869.050
|
469.563
|
904.245
|
717.953
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.640
|
-0.856
|
-0.201
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.