SCN Proteipedia

Hg_chrom3_TN10mRNA_5975

Organism: Heterodera glycines Gene Locus: chr3:8354497-8358403 Feature type: polypeptide

Protein Sequence

Length: 783

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.921	0.98	0.72	1.013	1.107	1.081	1.034	1.405	1.476	1.036	0.851	1.653	1.171	0.589	1.147	0.912	1.005	1.103	0.884	0.601	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5675	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.929

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.344	0.283	0.048	0.646	0.136	0.336	0.092	0.082	0.272	0.070

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007977	1.000	1.000	Hsc_gene_122.t1	Hsc_gene_122.t1	—	Q9TZL8.2 ATP-dependent 6-phosphofructokinase 1 [Caenorhabditis elegans]	KAI1730629.1 phosphofructokinase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003872\|GO:0005524\|GO:0005737\|GO:0006002\|GO:0006096	GO:0008150_0.868\|GO:0003674_0.822\|GO:0009987_0.767\|GO:0008152_0.695\|GO:0003824_0.672\|GO:0044238_0.666\|GO:0044237_0.660\|GO:0005575_0.659\|GO:0110165_0.657\|GO:0044281_0.604\|GO:0006139_0.595\|GO:1901135_0.587\|GO:0009056_0.585\|GO:0016740_0.584\|GO:0006793_0.581\|GO:0006796_0.581\|GO:0006082_0.574\|GO:0019752_0.574\|GO:0043436_0.574\|GO:0019637_0.573\|GO:0005975_0.565\|GO:0055086_0.565\|GO:0006753_0.564\|GO:0016491_0.564\|GO:0032787_0.564\|GO:0009117_0.560\|GO:0072521_0.560\|GO:0006091_0.557\|GO:0006163_0.557\|GO:0034655_0.557\|GO:0046434_0.556\|GO:0004618_0.552\|GO:0004619_0.552\|GO:0004634_0.552\|GO:0006090_0.552\|GO:0006096_0.552\|GO:0006195_0.552\|GO:0009132_0.552\|GO:0009134_0.552\|GO:0009135_0.552\|GO:0009137_0.552\|GO:0009141_0.552\|GO:0009144_0.552\|GO:0009150_0.552\|GO:0009154_0.552\|GO:0009166_0.552\|GO:0009179_0.552\|GO:0009181_0.552\|GO:0009185_0.552\|GO:0009191_0.552\|GO:0009199_0.552\|GO:0009205_0.552\|GO:0009259_0.552\|GO:0009261_0.552\|GO:0016052_0.552\|GO:0016301_0.552\|GO:0016620_0.552\|GO:0016772_0.552\|GO:0016774_0.552\|GO:0016829_0.552\|GO:0016835_0.552\|GO:0016836_0.552\|GO:0016853_0.552\|GO:0016866_0.552\|GO:0016868_0.552\|GO:0016903_0.552\|GO:0019362_0.552\|GO:0019364_0.552\|GO:0019693_0.552\|GO:0043891_0.552\|GO:0046031_0.552\|GO:0046032_0.552\|GO:0046034_0.552\|GO:0046496_0.552\|GO:0072523_0.552\|GO:0072524_0.552\|GO:0072526_0.552\|GO:1901136_0.552\|GO:1901292_0.552\|GO:0005622_0.548\|GO:0016310_0.528\|GO:0003872_0.524\|GO:0004332_0.524\|GO:0004807_0.524\|GO:0008443_0.524\|GO:0016773_0.524\|GO:0016830_0.524\|GO:0016832_0.524\|GO:0016860_0.524\|GO:0016861_0.524\|GO:0019200_0.524\|GO:0046835_0.524\|GO:0061615_0.524\|GO:0005737_0.511\|GO:0005488_0.504	IPR000023+30-334_419-703+\|IPR009161+5-782_28-778_29-775+\|IPR015912+304-322_672-690+\|IPR022953+32-51_57-70_121-137_171-188_189-207_209-225_227-244_266-278_300-322+\|IPR035966+28-366_190-397_351-779_561-767+	—	PF00365+30-334_419-703+Phosphofructokinase	G3DSA:3.40.50.450:FF:000043+29-239+ATP-dependent_6-phosphofructokinase,_platelet_type\|G3DSA:3.40.50.460:FF:000003+190-329+ATP-dependent_6-phosphofructokinase\|G3DSA:3.40.50.460:FF:000008+559-697+ATP-dependent_6-phosphofructokinase	PTHR13697+27-780+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-3	1.000	4-783	4omt_A	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.738	86373.090	7.932	16.000	24.649	10.217	45.594	54.406	14.049	10.600	50.575

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	3290.283	4902.090	3099.157	3542.373	4592.480	3827.438	3015.630	4259.036	1901.112	2754.830	2388.951

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.890	-0.606	0.301	0.343	-0.248	-0.334	—	-0.355	—	—	—	—	—

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