SCN Proteipedia

Hg_chrom3_TN10mRNA_5977

Organism: Heterodera glycines Gene Locus: chr3:8363096-8366289 Feature type: polypeptide

Protein Sequence

Length: 642

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.652	0.724	0.935	0.161	2.492	1.518	0.723	0.935	0.623	0.905	1.227	0.641	0.476	0.959	1.43	1.535	1.124	0.873	0.359	0.183	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5677	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRRK,KKRQKDAENRKRKVE,RRSGGGGESGGRSRQSRR	—	—	—	—	—	—	0.000	—	—	0.858	0.096	0.013	0.235	0.043	0.039	0.053	0.021	0.042	0.112

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001973	2.000	2.000	Hsc_gene_124.t1;Hsc_gene_124.t2	Hsc_gene_124.t1;Hsc_gene_124.t2	—	—	KAI3420273.1 Apoptotic chromatin condensation inducer in the nucleus [Globodera pallida]	No	-0.090

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676	GO:0005575_0.958\|GO:0110165_0.953\|GO:0005622_0.919\|GO:0043226_0.760\|GO:0016020_0.758\|GO:0043229_0.735\|GO:0008150_0.687\|GO:0043227_0.677\|GO:0009987_0.651\|GO:0043231_0.643\|GO:0065007_0.640\|GO:0005634_0.631\|GO:0050789_0.629\|GO:0050794_0.617\|GO:0003674_0.603\|GO:0005488_0.603\|GO:0031974_0.564\|GO:0031981_0.564\|GO:0043233_0.564\|GO:0070013_0.564\|GO:0008152_0.529\|GO:0019222_0.529\|GO:0043170_0.529\|GO:0048518_0.525\|GO:0009058_0.520\|GO:0009059_0.520\|GO:0010467_0.520\|GO:0044237_0.520\|GO:0044249_0.520\|GO:0031323_0.517\|GO:0006139_0.516\|GO:0044238_0.516\|GO:0090304_0.516\|GO:0060255_0.515\|GO:0048522_0.513\|GO:0080090_0.505\|GO:0034654_0.503\|GO:0141187_0.503	IPR003034+15-49+\|IPR012677+396-507+\|IPR032552+535-588+\|IPR034257+408-497+\|IPR035979+398-491+\|IPR036361+3-61_15-52+\|IPR052793+399-502+	SM00513+15-49+	PF02037+15-49+SAP_domain\|PF16294+535-588+RNSP1-SAP18_binding_(RSB)_motif	—	PTHR46589+399-502+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-414;486-642	1.000	415-485	6g6s_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.553	71678.550	4.787	-26.000	37.072	4.673	63.707	36.293	16.978	20.093	48.754

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkturquoise	5299.808	9488.697	7187.625	5285.895	4803.087	4179.126	3595.281	5283.636	6847.201	3117.504	4715.945

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.630	-0.981	-0.334	-0.170	-0.186	-0.206	0.234	-0.412	—	—	—	—	—

No JSON data available for plots.

Back to Browser