Hg_chrom3_TN10mRNA_5979
Organism: Heterodera glycines Gene Locus: chr3:8367354-8368493 Feature type: polypeptideProtein Sequence
Length: 167
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.836 | 1.393 | 0.98 | 0.206 | 1.896 | 1.996 | 0.713 | 1.198 | 1.331 | 1.295 | 1.179 | 1.409 | 1.663 | 0.115 | 0.855 | 0.855 | 0.491 | 0.544 | 0.461 | 1.057 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5678
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.434
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.501
|
0.321
|
0.028
|
0.683
|
0.102
|
0.167
|
0.063
|
0.019
|
0.086
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007979
|
1.000
|
1.000
|
Hsc_gene_125.t1
|
Hsc_gene_125.t1
|
— |
P17663.2 Ferritin heavy chain B [Xenopus laevis]
|
KAI1730779.1 ferritin-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006826|GO:0006879|GO:0008199
|
GO:0005575_0.813|GO:0110165_0.807|GO:0005622_0.797|GO:0008150_0.748|GO:0043226_0.741|GO:0043229_0.722|GO:0005737_0.720|GO:0016020_0.720|GO:0043227_0.652|GO:0043231_0.641|GO:0003674_0.571|GO:0005488_0.548|GO:0009987_0.532
|
IPR001519+7-162+|IPR008331+19-150+|IPR009040+11-151+|IPR009078+6-164+|IPR012347+3-167+|IPR014034+118-138+
|
— |
PF00210+19-150+Ferritin-like_domain
|
G3DSA:1.20.1260.10:FF:000002+1-167+Ferritin,_mitochondrial
|
PTHR11431+7-162+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-167
|
8cu8_Y
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
19320.660
|
4.817
|
-6.000
|
31.138
|
12.575
|
53.892
|
46.108
|
14.371
|
16.766
|
38.323
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
3592.754
|
2986.073
|
2843.186
|
3456.834
|
4202.040
|
3531.576
|
3395.529
|
5118.071
|
1846.042
|
4758.775
|
3510.461
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.300
|
0.074
|
0.390
|
0.250
|
-0.236
|
— |
0.430
|
-0.449
|
-1.468
|
— | — | — | — |
No JSON data available for plots.