Hg_chrom3_TN10mRNA_5981
Organism: Heterodera glycines Gene Locus: chr3:8372782-8374926 Feature type: polypeptideProtein Sequence
Length: 374
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.746 | 1.244 | 1.313 | 0.369 | 1.159 | 1.166 | 0.859 | 1.07 | 0.891 | 1.373 | 1.377 | 2.517 | 0.817 | 0.617 | 1.146 | 0.917 | 1.096 | 0.729 | 0.823 | 0.236 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5680
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.681
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KNRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.480
|
0.204
|
0.095
|
0.567
|
0.081
|
0.136
|
0.239
|
0.049
|
0.327
|
0.128
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007981
|
1.000
|
1.000
|
Hsc_gene_127.t1
|
Hsc_gene_127.t1
|
— | — |
KAI1702234.1 skp1 family, dimerization domain-containing protein [Ditylenchus destructor]
|
No
|
-0.030
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.871|GO:0009987_0.825|GO:0065007_0.710|GO:0050789_0.696|GO:0050794_0.686|GO:0050896_0.587|GO:0051716_0.560|GO:0007154_0.529|GO:0023052_0.527|GO:0042221_0.515|GO:0007165_0.511
|
IPR011333+161-332+|IPR016072+285-329+|IPR016897+169-328+|IPR036296+256-329+
|
— |
PF01466+285-329+Skp1_family,_dimerisation_domain
|
— |
PTHR11165+169-328+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-167;347-374
|
1.000
|
168-346
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.727
|
41853.690
|
8.156
|
6.000
|
31.016
|
6.952
|
54.011
|
45.989
|
16.845
|
14.171
|
48.396
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1643.099
|
1615.985
|
1500.107
|
1393.155
|
1506.325
|
1524.967
|
1404.834
|
1452.643
|
1615.159
|
2077.934
|
1879.601
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.336
|
-0.351
|
— | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.