SCN Proteipedia

Hg_chrom3_TN10mRNA_5983

Organism: Heterodera glycines Gene Locus: chr3:8377457-8379435 Feature type: polypeptide

Protein Sequence

Length: 403 (Signal peptide: 1-21)

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.808	0.635	0.767	4.107	1.323	1.082	0.945	2.109	0.662	0.637	0.94	1.168	1.034	1.384	1.317	0.957	0.936	0.489	0.191	0.219	0.0

Composition

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5682	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	Hsc_gene_130	—	27-ppJ2_pJ2_J3_J4_Female_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	secreted	signal_peptide	extracellular	nucleus	RRRK	—	—	—	—	1-21	1.000	1.000	0.000	0.000	0.187	0.274	0.052	0.133	0.158	0.166	0.132	0.066	0.122	0.951

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	Hsc_gene_129.t1;Hsc_gene_130.t1	—	P28799.2 Progranulin [Homo sapiens]	KHN88158.1 Granulin, partial [Toxocara canis]	No	-0.040

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.898\|GO:0065007_0.890\|GO:0050789_0.881\|GO:0009987_0.873\|GO:0050794_0.873\|GO:0032501_0.859\|GO:0005575_0.847\|GO:0110165_0.847\|GO:0050896_0.833\|GO:0032502_0.828\|GO:0048856_0.828\|GO:0048518_0.790\|GO:0030154_0.778\|GO:0048869_0.778\|GO:0048522_0.777\|GO:0048468_0.737\|GO:0008283_0.733\|GO:0050793_0.714\|GO:0003674_0.697\|GO:0016043_0.688\|GO:0071840_0.688\|GO:0051128_0.650\|GO:0051179_0.648\|GO:0006810_0.638\|GO:0051234_0.638\|GO:0051641_0.637\|GO:0006996_0.632\|GO:0051130_0.628\|GO:0051649_0.620\|GO:0051716_0.598\|GO:0007275_0.591\|GO:0048731_0.577\|GO:0048519_0.575\|GO:0051239_0.559\|GO:0048523_0.550\|GO:0005622_0.545\|GO:0008152_0.543\|GO:0043170_0.543\|GO:0048583_0.543\|GO:0019222_0.540\|GO:0060255_0.534\|GO:0003824_0.533\|GO:0140096_0.533\|GO:0016020_0.532\|GO:0005576_0.530\|GO:0044238_0.525\|GO:0080090_0.525\|GO:0007399_0.519\|GO:0009893_0.509\|GO:0019538_0.507\|GO:0071944_0.507\|GO:0010604_0.499\|GO:0022008_0.498\|GO:0042127_0.495\|GO:0016787_0.493\|GO:0006950_0.492\|GO:0005488_0.489\|GO:0008233_0.488\|GO:0005886_0.487\|GO:0008219_0.487\|GO:0012501_0.487\|GO:0043067_0.484\|GO:0005615_0.483\|GO:0043226_0.482\|GO:0048699_0.482\|GO:0002376_0.481\|GO:0030182_0.476\|GO:0006915_0.475\|GO:0051241_0.475\|GO:0048585_0.473\|GO:0042981_0.472\|GO:0008284_0.468\|GO:0043229_0.467\|GO:0065009_0.463\|GO:0009605_0.462\|GO:0016477_0.460\|GO:0043227_0.460\|GO:0044419_0.460\|GO:0048870_0.460\|GO:0051094_0.459\|GO:0051246_0.458\|GO:0006952_0.454\|GO:0048666_0.453\|GO:0001775_0.452\|GO:0009607_0.450\|GO:0043207_0.450\|GO:0050790_0.450\|GO:0002682_0.448\|GO:0051707_0.447\|GO:0005737_0.446\|GO:0006955_0.444\|GO:0043231_0.444\|GO:0098542_0.444\|GO:0005515_0.443\|GO:0080134_0.442\|GO:0045321_0.440\|GO:0030334_0.439\|GO:0040011_0.439\|GO:0040012_0.439\|GO:2000145_0.439\|GO:0030030_0.438\|GO:0120036_0.438\|GO:0050673_0.434\|GO:0051247_0.434\|GO:0045087_0.433\|GO:0140546_0.433\|GO:0006508_0.432\|GO:0030335_0.432\|GO:0031175_0.432\|GO:0032101_0.432\|GO:0040017_0.432\|GO:0044093_0.432\|GO:2000147_0.432\|GO:0031347_0.430\|GO:0051336_0.429\|GO:0002683_0.428\|GO:0043085_0.428\|GO:0050776_0.428\|GO:0050865_0.428\|GO:0006954_0.427\|GO:0022414_0.426\|GO:0002252_0.425\|GO:0050678_0.425\|GO:0002694_0.424\|GO:0051402_0.424\|GO:0002831_0.423\|GO:0031344_0.423\|GO:0051345_0.423\|GO:0120035_0.423\|GO:0032102_0.422\|GO:0050727_0.422\|GO:0043523_0.421\|GO:0050679_0.421\|GO:0007154_0.420\|GO:0045088_0.420\|GO:0030162_0.419\|GO:0033043_0.419\|GO:0050866_0.419\|GO:0002274_0.418\|GO:0030054_0.418\|GO:0002695_0.417\|GO:0031348_0.417\|GO:0050728_0.417\|GO:0046907_0.416\|GO:0050777_0.416\|GO:0010975_0.415\|GO:0052547_0.415\|GO:0023052_0.414\|GO:0007610_0.413\|GO:0002832_0.412\|GO:0007033_0.412\|GO:0007034_0.412\|GO:0007040_0.412\|GO:0007041_0.412\|GO:0010638_0.412\|GO:0010952_0.412\|GO:0044088_0.412\|GO:0044090_0.412\|GO:0045824_0.412\|GO:0045862_0.412\|GO:0070001_0.412\|GO:0080171_0.412\|GO:1905245_0.412\|GO:1905247_0.412\|GO:1905671_0.412\|GO:1905673_0.412\|GO:0031346_0.403\|GO:0010976_0.397\|GO:0007165_0.392\|GO:0005773_0.389\|GO:0012505_0.389\|GO:0005102_0.386\|GO:0045202_0.383\|GO:0031982_0.379\|GO:0005794_0.351	IPR000118+30-83_42-84_63-76_122-193_159-194_173-186_241-295_252-296_328-386_354-385+\|IPR037277+27-97_119-203_241-307_326-396+\|IPR039036+243-388+	SM00277+30-83_122-193_241-295_328-386+	PF00396+42-84_159-194_252-296_354-385+Granulin	—	PTHR12274+243-388+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-403	2jyv_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.793	44125.250	7.394	10.500	29.032	8.933	48.387	51.613	16.873	12.159	56.576

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	grey	3635.731	732.303	4337.341	2839.655	4336.786	4528.955	5696.097	3797.488	4388.377	2764.307	3460.337

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.339	1.818	-0.504	0.579	—	0.342	—	0.727	—	—	—	—	—

Properties

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