SCN Proteipedia

Hg_chrom3_TN10mRNA_5984

Organism: Heterodera glycines Gene Locus: chr3:8379652-8384536 Feature type: polypeptide

Protein Sequence

Length: 678

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.669	1.029	0.965	1.017	0.983	0.908	0.632	0.959	1.049	1.495	0.693	1.735	1.762	1.049	1.023	1.349	0.701	1.006	1.475	0.737	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5683	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.970

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.001	—	—	0.055	0.044	0.011	0.149	0.249	0.181	0.180	0.006	0.792	0.039

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003636	2.000	1.000	Hsc_gene_131.t2	Hsc_gene_131.t2	—	P49582.1 Neuronal acetylcholine receptor subunit alpha-7 [Mus musculus]	KAI1730744.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0022848\|GO:0034220\|GO:0045211	GO:0005575_0.956\|GO:0110165_0.956\|GO:0071944_0.904\|GO:0016020_0.887\|GO:0005886_0.881\|GO:0008150_0.860\|GO:0009987_0.799\|GO:0065007_0.766\|GO:0050789_0.714\|GO:0051179_0.712\|GO:0006810_0.709\|GO:0051234_0.709\|GO:0007154_0.647\|GO:0023052_0.647\|GO:0050794_0.644\|GO:0050896_0.636\|GO:0030054_0.628\|GO:0032501_0.625\|GO:0003674_0.618\|GO:0055085_0.605\|GO:0045202_0.599\|GO:0098590_0.599\|GO:0051716_0.584\|GO:0006811_0.583\|GO:0034220_0.580\|GO:0007267_0.567\|GO:0098916_0.564\|GO:0099536_0.564\|GO:0099537_0.564\|GO:0007268_0.560\|GO:0007165_0.543\|GO:0003008_0.535\|GO:0065008_0.524\|GO:0006812_0.515\|GO:0098655_0.513\|GO:0043226_0.504	IPR002394+85-101_119-133_137-149_155-173+\|IPR006029+262-417+\|IPR006201+30-394_55-428_98-114_131-142_175-189_249-261+\|IPR006202+52-255+\|IPR018000+175-189+\|IPR036719+255-677+\|IPR036734+41-259_50-254+\|IPR038050+260-376_608-678+	—	PF02931+52-255+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+262-417+Neurotransmitter-gated_ion-channel_transmembrane_region	G3DSA:1.20.58.390:FF:000043+261-376+AcetylCholine_Receptor\|G3DSA:2.70.170.10:FF:000016+43-260+Nicotinic_acetylcholine_receptor_subunit	PTHR18945+55-428+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-678	8v8d_E	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.673	76594.000	5.941	-4.500	22.714	12.684	44.395	55.605	11.504	11.209	49.558

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	185.340	535.278	680.359	169.199	69.060	42.084	60.192	178.571	16.231	148.159	91.618

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.799	-1.898	-1.322	-0.702	0.526	1.983	-1.428	—	—	—	—	—

No JSON data available for plots.

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