SCN Proteipedia

Hg_chrom3_TN10mRNA_5985

Organism: Heterodera glycines Gene Locus: chr3:8385777-8390533 Feature type: polypeptide

Protein Sequence

Length: 782

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.669	0.981	1.139	1.146	1.023	1.148	0.716	1.279	1.08	1.452	1.046	1.128	1.172	0.984	1.566	0.913	0.755	0.891	0.59	0.639	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5684	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKRGEKERGGKRPKL,RKYPFVRLDGSMSIKQRSK	96-116	0.973	24-64	1.000	—	—	0.000	—	—	0.930	0.115	0.029	0.280	0.041	0.044	0.033	0.004	0.049	0.037

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007983	1.000	1.000	Hsc_gene_132.t1	Hsc_gene_132.t1	—	F1Q8K0.1 DNA repair and recombination protein RAD54-like [Danio rerio]	KAI3420263.1 Class II histone deacetylase complex subunits 2 and 3 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0140658	GO:0008150_0.866\|GO:0009987_0.820\|GO:0005575_0.693\|GO:0008152_0.687\|GO:0110165_0.681\|GO:0043170_0.680\|GO:0044238_0.668\|GO:0003674_0.647\|GO:0006139_0.620\|GO:0005622_0.609\|GO:0090304_0.602\|GO:0050896_0.598\|GO:0051716_0.563\|GO:0016020_0.557\|GO:0043226_0.528\|GO:0006259_0.514\|GO:0043229_0.509\|GO:0005488_0.507\|GO:0071840_0.501	IPR000330+161-471+\|IPR001650+508-622_511-664_538-622+\|IPR014001+154-362_175-350+\|IPR027417+139-400_400-706_405-731+\|IPR038718+123-399+\|IPR049730+506-633+\|IPR050496+122-719+	SM00487+154-362+\|SM00490+538-622+	PF00176+161-471+SNF2-related_domain\|PF00271+508-622+Helicase_conserved_C-terminal_domain	G3DSA:3.40.50.10810:FF:000010+129-399+DNA_repair_and_recombination_protein_RAD54-like\|G3DSA:3.40.50.300:FF:000332+494-673+DNA_repair_and_recombination_protein_RAD54-like	PTHR45629+122-719+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25;733-782	1.000	26-732	9gfb_G	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.803	88661.860	8.651	27.000	29.540	9.719	49.233	50.767	17.136	12.404	47.570

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	746.482	219.338	167.701	781.064	1030.062	717.925	2681.629	234.519	30.976	1055.537	616.440

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.618	1.695	2.329	0.368	-0.506	1.913	-1.728	3.661	-5.201	—	—	—	—

No JSON data available for plots.

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