Hg_chrom3_TN10mRNA_5988
Organism: Heterodera glycines Gene Locus: chr3:8393436-8399452 Feature type: polypeptideProtein Sequence
Length: 1,233
(Signal peptide: 1-43)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 0.981 | 0.855 | 1.342 | 1.298 | 1.04 | 0.85 | 1.054 | 0.649 | 1.184 | 0.86 | 1.431 | 0.991 | 1.185 | 1.076 | 1.24 | 0.891 | 1.204 | 0.374 | 0.596 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5686
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
cell_membrane
|
nucleus
|
RKKR,KHRKKHKNRRQRR,KKALVSGTSEGKGAKEDKK,KKRESAADEVTEFETRRFK,KRESAADEVTEFETRRFKV
|
— | — | — | — |
1-43
|
0.710
|
0.809
|
1.000
|
1.000
|
0.123
|
0.040
|
0.059
|
0.207
|
0.115
|
0.173
|
0.423
|
0.047
|
0.710
|
0.383
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001974
|
3.000
|
1.000
|
Hsc_gene_134.t1
|
Hsc_gene_134.t1;Hsc_gene_134.t2
|
— | — |
KAI1730765.1 PAN domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR001507+759-1098_759-1102+|IPR003609+56-142_150-236_151-235_241-330_244-329_248-330_337-427_338-426_342-427_434-523_440-522_461-523_535-617_538-616+|IPR052774+319-436+
|
SM00241+759-1098+|SM00473+56-142_151-235_244-329_338-426_440-522_538-616+
|
PF00024+150-236_248-330_342-427_461-523+PAN_domain
|
G3DSA:3.50.4.10:FF:000014+152-238_339-429+NOmpA_Homolog_(Drosophila_nompA:_no_mechanoreceptor_potential_A)
|
PTHR47327+319-436+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
628-888;930-979
|
3.000
|
1-627;889-929;980-1233
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
135079.440
|
6.143
|
-6.000
|
25.547
|
8.191
|
47.932
|
52.068
|
13.058
|
12.490
|
54.907
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
1426.527
|
1741.101
|
88.258
|
246.332
|
3564.693
|
4835.180
|
869.128
|
662.139
|
37.991
|
1710.002
|
993.426
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.528
|
-2.959
|
1.587
|
3.823
|
0.457
|
-2.468
|
-2.989
|
— |
-5.603
|
— | — | — | — |