SCN Proteipedia

Hg_chrom3_TN10mRNA_5989

Organism: Heterodera glycines Gene Locus: chr3:8400635-8403915 Feature type: polypeptide

Protein Sequence

Length: 719

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.647	0.841	1.34	0.576	1.159	0.963	0.745	1.391	0.927	1.24	1.075	1.473	1.236	1.177	1.391	0.934	0.844	0.885	1.284	0.736	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5687	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.965

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RKSK,PFTKRKG,RRKWEETEPEKRRVD,RRIVGRMVHAIKMGWLKRK,KRLFGHKFFAKRELDKLRR	—	—	—	—	—	—	0.000	—	—	0.758	0.130	0.018	0.275	0.070	0.029	0.035	0.002	0.105	0.013

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007985	1.000	1.000	Hsc_gene_135.t1	Hsc_gene_135.t1	—	A8XYW9.1 Ribosome biogenesis protein BOP1 homolog [Caenorhabditis briggsae]	KAI1711165.1 BOP1NT domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0006364\|GO:0042254	GO:0008150_0.951\|GO:0005575_0.919\|GO:0110165_0.909\|GO:0009987_0.895\|GO:0005622_0.852\|GO:0016020_0.841\|GO:0043226_0.799\|GO:0043229_0.772\|GO:0043227_0.742\|GO:0043231_0.724\|GO:0003674_0.634\|GO:0005634_0.626\|GO:0071840_0.624\|GO:0043228_0.609\|GO:0043232_0.609\|GO:0031974_0.576\|GO:0043233_0.576\|GO:0008152_0.574\|GO:0070013_0.574\|GO:0031981_0.571\|GO:0005488_0.565\|GO:0044238_0.562\|GO:0044085_0.557\|GO:0044237_0.547\|GO:0043170_0.544\|GO:0009058_0.541\|GO:0022613_0.536\|GO:0044249_0.527\|GO:0005730_0.526\|GO:0009059_0.520\|GO:0042254_0.520\|GO:0042273_0.520\|GO:0010467_0.508	IPR001680+326-366_333-365_333-375_369-409_370-403_447-487_490-528_531-570_574-613_577-612_679-718_692-716+\|IPR012953+58-326+\|IPR015943+316-645_683-719+\|IPR028598+1-718_21-718+\|IPR036322+290-717+	SM00320+326-366_369-409_447-487_490-528_531-570_574-613_679-718+\|SM01035+58-326+	PF00400+333-365_370-403_577-612_692-716+WD_domain,_G-beta_repeat\|PF08145+58-326+BOP1NT_(NUC169)_domain	—	PTHR17605+21-718+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-52;189-257	2.000	53-188;258-719	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.680	81957.170	7.136	7.000	31.015	11.405	50.070	49.930	16.690	14.325	48.122

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	greenyellow	2077.565	2727.598	2165.124	3004.333	2581.622	2029.921	2980.040	2287.598	1229.520	1501.117	1384.718

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.563	—	0.582	-0.251	-0.332	0.565	—	0.524	—	—	—	—	—

No JSON data available for plots.

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