Hg_chrom3_TN10mRNA_5990
Organism: Heterodera glycines Gene Locus: chr3:8404989-8409466 Feature type: polypeptideProtein Sequence
Length: 933
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.586 | 1.321 | 0.974 | 0.739 | 1.465 | 1.209 | 0.523 | 1.125 | 1.31 | 1.115 | 1.039 | 1.009 | 1.429 | 0.66 | 1.312 | 1.072 | 1.037 | 0.861 | 0.577 | 1.072 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5688
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKKK,RKCLKESFHSEFTRIERKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.428
|
0.177
|
0.006
|
0.630
|
0.124
|
0.215
|
0.155
|
0.046
|
0.156
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007986
|
1.000
|
1.000
|
Hsc_gene_136.t1
|
Hsc_gene_136.t1
|
— |
Q1LXK4.2 Putative helicase mov-10-B.1 [Danio rerio]
|
KAI1732465.1 AAA domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004386
|
GO:0008150_0.880|GO:0009987_0.830|GO:0005575_0.797|GO:0110165_0.788|GO:0005622_0.702|GO:0003674_0.650|GO:0065007_0.633|GO:0050789_0.621|GO:0008152_0.604|GO:0050794_0.604|GO:0043226_0.599|GO:0043170_0.596|GO:0043229_0.578|GO:0044238_0.557|GO:0016020_0.554|GO:0005488_0.552|GO:0005737_0.550|GO:0044237_0.515|GO:0009058_0.510
|
IPR027417+132-451_227-663_478-673+|IPR041677+232-302_358-427+|IPR041679+469-639+|IPR045055+133-791+|IPR047187+480-663+
|
— |
PF13086+232-302_358-427+AAA_domain|PF13087+469-639+AAA_domain
|
— |
PTHR10887+133-791+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
730-933
|
1.000
|
1-729
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.595
|
107616.640
|
6.696
|
2.500
|
29.689
|
11.790
|
53.912
|
46.088
|
15.541
|
14.148
|
45.552
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
2355.402
|
2535.641
|
2258.436
|
2181.546
|
2373.686
|
2526.554
|
2773.373
|
2599.450
|
2531.117
|
1938.290
|
2192.359
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.396
|
-0.354
|
— | — | — | — | — |
0.235
|
— | — | — | — | — |
No JSON data available for plots.