Hg_chrom3_TN10mRNA_5991
Organism: Heterodera glycines Gene Locus: chr3:8409478-8410773 Feature type: polypeptideProtein Sequence
Length: 318
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.804 | 1.17 | 0.915 | 0.651 | 0.996 | 0.887 | 0.412 | 1.101 | 1.607 | 1.487 | 0.905 | 1.11 | 2.621 | 0.665 | 0.834 | 1.438 | 0.619 | 0.81 | 0.242 | 1.017 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5689
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.721
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.658
|
0.215
|
0.018
|
0.387
|
0.195
|
0.095
|
0.082
|
0.015
|
0.030
|
0.158
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003637
|
2.000
|
1.000
|
Hsc_gene_137.t1
|
— | — | — |
KAI1732796.1 origin recognition complex subunit 5 [Ditylenchus destructor]
|
No
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000808|GO:0005634|GO:0006260
|
GO:0008150_0.941|GO:0009987_0.884|GO:0008152_0.772|GO:0044238_0.759|GO:0044237_0.757|GO:0009058_0.747|GO:0043170_0.731|GO:0044249_0.727|GO:0009059_0.717|GO:0006139_0.708|GO:0034654_0.695|GO:0090304_0.694|GO:0141187_0.688|GO:0006259_0.678|GO:0071897_0.674|GO:0006260_0.670|GO:0005575_0.636|GO:0110165_0.636|GO:0016020_0.570|GO:0005622_0.563|GO:0005737_0.533|GO:0043226_0.532|GO:0043229_0.508
|
IPR020796+179-314+
|
— | — | — |
PTHR12705+179-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-318
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
36283.750
|
6.600
|
0.500
|
23.270
|
15.409
|
45.597
|
54.403
|
12.264
|
11.006
|
44.969
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
midnightblue
|
506.307
|
267.832
|
291.967
|
299.912
|
394.001
|
266.833
|
365.948
|
317.021
|
189.363
|
1246.755
|
793.587
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.361
|
-0.547
|
0.467
|
— |
0.350
|
-2.877
|
— | — | — | — |
No JSON data available for plots.