Hg_chrom3_TN10mRNA_5994
Organism: Heterodera glycines Gene Locus: chr3:8413418-8415918 Feature type: polypeptideProtein Sequence
Length: 456
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.969 | 1.377 | 0.837 | 0.907 | 1.389 | 1.574 | 0.757 | 0.768 | 0.926 | 1.245 | 0.764 | 1.677 | 0.975 | 0.843 | 1.119 | 0.877 | 1.043 | 1.096 | 0.169 | 0.451 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5692
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.559
|
0.348
|
0.049
|
0.623
|
0.145
|
0.070
|
0.210
|
0.094
|
0.086
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007989
|
1.000
|
1.000
|
Hsc_gene_140.t1
|
Hsc_gene_140.t1
|
— |
Q3KQ23.1 Ubiquitin-like modifier-activating enzyme 5 [Xenopus laevis]
|
KAI1711163.1 thiF family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008641
|
GO:0008150_0.927|GO:0003674_0.684|GO:0009987_0.647|GO:0005575_0.570|GO:0110165_0.560|GO:0003824_0.531
|
IPR000594+67-316+|IPR035985+52-329+|IPR045886+50-336+
|
— |
PF00899+67-316+ThiF_family
|
G3DSA:3.40.50.720:FF:000066+84-342+Putative_ubiquitin-like_modifier-activating_enzyme_5
|
PTHR10953+50-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
321-456
|
1.000
|
1-320
|
6h78_P
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
50291.020
|
5.144
|
-7.500
|
25.000
|
6.798
|
49.561
|
50.439
|
12.061
|
12.939
|
51.974
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
1663.805
|
977.101
|
1030.750
|
1444.706
|
1603.617
|
1413.212
|
1575.102
|
1135.486
|
1267.605
|
2885.952
|
2192.375
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.151
|
0.427
|
0.595
|
0.119
|
-0.167
|
0.166
|
-0.420
|
0.614
|
— | — | — | — | — |
No JSON data available for plots.