SCN Proteipedia

Hg_chrom3_TN10mRNA_5995

Organism: Heterodera glycines Gene Locus: chr3:8416557-8424404 Feature type: polypeptide

Protein Sequence

Length: 1,359

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.078	0.89	0.682	0.33	1.141	1.208	0.937	1.067	1.504	1.323	0.58	1.255	1.676	0.524	1.367	1.083	0.844	1.037	0.736	0.628	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5693	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane\|lysosome_vacuole	—	RKAK,RKHSPAMVLRRRKTS	59-79	0.994	—	—	—	—	0.000	—	—	0.116	0.089	0.017	0.201	0.279	0.639	0.363	0.075	0.687	0.075

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001975	1.000	3.000	Hsc_gene_141.t1;Hsc_gene_141.t2;Hsc_gene_141.t3	Hsc_gene_141.t1;Hsc_gene_141.t2;Hsc_gene_141.t3	—	P08183.3 ATP-dependent translocase ABCB1 [Homo sapiens]	KAI3420255.1 Multidrug resistance protein 1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0016020\|GO:0016887\|GO:0055085\|GO:0140359	GO:0005575_0.898\|GO:0110165_0.898\|GO:0008150_0.813\|GO:0016020_0.798\|GO:0071944_0.774\|GO:0005886_0.764\|GO:0009987_0.606\|GO:0051179_0.584\|GO:0006810_0.577\|GO:0051234_0.577\|GO:0003674_0.517	IPR003439+430-666_448-597_1111-1350_1129-1281+\|IPR003593+457-643_1138-1334+\|IPR011527+85-380_85-395_812-1077_816-974+\|IPR017871+569-583_1253-1267+\|IPR027417+420-667_452-676_1102-1358_1106-1352+\|IPR036640+66-441_72-411_765-1100_794-1264+\|IPR039421+755-1348+	SM00382+457-643_1138-1334+	PF00005+448-597_1129-1281+ABC_transporter\|PF00664+85-380_816-974+ABC_transporter_transmembrane_region	G3DSA:1.20.1560.10:FF:000018+71-424+ATP-binding_cassette_subfamily_B_member_11\|G3DSA:3.40.50.300:FF:000205+420-676+ABC_transporter_B_family_member_4\|G3DSA:3.40.50.300:FF:000479+1101-1352+Multidrug_resistance_protein_1A	PTHR24221+755-1348+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	652-762	2.000	1-651;763-1359	4q7l_C	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.684	150631.400	7.489	13.500	23.252	11.258	44.518	55.482	12.656	10.596	47.976

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	brown	3350.079	6031.260	4345.311	3445.117	3410.993	3196.053	5625.602	2747.979	3185.714	1466.444	2203.274

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.703	-0.945	-0.226	—	—	0.827	-0.322	1.176	—	—	—	—	—

No JSON data available for plots.

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