Hg_chrom3_TN10mRNA_5996
Organism: Heterodera glycines Gene Locus: chr3:8424894-8426530 Feature type: polypeptideProtein Sequence
Length: 336
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.692 | 1.19 | 1.232 | 0.992 | 1.145 | 0.85 | 1.339 | 1.19 | 1.609 | 1.082 | 1.401 | 1.571 | 0.973 | 1.215 | 0.935 | 0.732 | 0.541 | 0.687 | 0.175 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5694
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.671
|
0.142
|
0.073
|
0.460
|
0.177
|
0.198
|
0.093
|
0.035
|
0.066
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007990
|
1.000
|
1.000
|
Hsc_gene_142.t1
|
Hsc_gene_142.t1
|
— |
Q60ZM2.1 Elongator complex protein 4 [Caenorhabditis briggsae]
|
KAI1721387.1 PAXNEB protein [Ditylenchus destructor]
|
No
|
-0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0002098|GO:0033588
|
GO:0008150_0.941|GO:0005575_0.900|GO:0009987_0.881|GO:0110165_0.646|GO:0032991_0.641|GO:0005622_0.588|GO:1902494_0.565|GO:0016020_0.556|GO:0140535_0.555|GO:0033588_0.540|GO:0003674_0.537|GO:0043226_0.537|GO:0065007_0.523|GO:0005737_0.517|GO:0043229_0.517|GO:0050789_0.514
|
IPR008728+11-326+|IPR027417+4-319+
|
— |
PF05625+11-326+PAXNEB_protein
|
— |
PTHR12896+11-326+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;77-133
|
2.000
|
5-76;134-336
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
37509.280
|
7.751
|
6.500
|
28.274
|
9.821
|
46.726
|
53.274
|
15.774
|
12.500
|
47.024
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
373.371
|
225.553
|
279.736
|
421.301
|
398.561
|
360.618
|
610.085
|
261.920
|
231.620
|
500.619
|
385.334
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.764
|
0.700
|
— | — |
0.770
|
-0.569
|
1.364
|
— | — | — | — | — |
No JSON data available for plots.