Hg_chrom3_TN10mRNA_5997
Organism: Heterodera glycines Gene Locus: chr3:8426691-8428451 Feature type: polypeptideProtein Sequence
Length: 211
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.716 | 1.433 | 0.862 | 0.163 | 2.607 | 1.337 | 0.226 | 0.237 | 0.948 | 1.409 | 1.293 | 2.788 | 0.658 | 0.182 | 1.257 | 0.948 | 0.855 | 1.005 | 0.365 | 0.836 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5695
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KKSLEDAQEDERENFRRFK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.430
|
0.224
|
0.034
|
0.626
|
0.117
|
0.248
|
0.292
|
0.061
|
0.037
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007991
|
1.000
|
1.000
|
Hsc_gene_143.t1
|
Hsc_gene_143.t1
|
— |
O18054.1 Probable prefoldin subunit 3 [Caenorhabditis elegans]
|
KAI1730758.1 prefoldin subunit domain-containing protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006457|GO:0016272
|
GO:0005575_0.926|GO:0110165_0.915|GO:0005622_0.896|GO:0005737_0.740|GO:0008150_0.670|GO:0009987_0.631|GO:0043226_0.577|GO:0016020_0.576|GO:0043229_0.553|GO:0043227_0.514
|
IPR004127+69-185+|IPR009053+58-195+|IPR016655+15-197_15-201+
|
— |
PF02996+69-185+Prefoldin_subunit
|
— |
PTHR12409+15-197+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-26
|
1.000
|
27-211
|
6nrd_3
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
24686.940
|
4.526
|
-11.500
|
35.545
|
6.161
|
58.768
|
41.232
|
15.166
|
20.379
|
38.863
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1386.731
|
1013.154
|
1092.761
|
1119.111
|
1209.082
|
1220.791
|
1376.845
|
1462.909
|
1908.621
|
1449.987
|
1646.545
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.121
|
— |
0.143
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.