Hg_chrom3_TN10mRNA_5998
Organism: Heterodera glycines Gene Locus: chr3:8430477-8434504 Feature type: polypeptideProtein Sequence
Length: 786
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.731 | 1.598 | 0.578 | 0.746 | 0.551 | 2.055 | 0.5 | 1.845 | 0.679 | 1.135 | 0.154 | 1.572 | 0.707 | 1.101 | 0.753 | 1.69 | 1.085 | 1.099 | 0.098 | 0.225 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5696
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.669
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
36-56
|
0.999
|
— | — |
0.000
|
— | — |
0.816
|
0.105
|
0.012
|
0.542
|
0.109
|
0.029
|
0.043
|
0.109
|
0.070
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007992
|
1.000
|
1.000
|
Hsc_gene_144.t1
|
Hsc_gene_144.t1
|
— |
Q90ZT7.1 E3 ubiquitin-protein ligase arkadia-A [Xenopus laevis]
|
KAI3420252.1 cytochrome c oxidase subunit 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.908|GO:0005575_0.699|GO:0110165_0.698|GO:0003674_0.686|GO:0009987_0.668|GO:0008152_0.639|GO:0043170_0.613|GO:0044238_0.608|GO:0016020_0.574|GO:0065007_0.558|GO:0050789_0.549|GO:0050794_0.535|GO:0019538_0.534|GO:0005622_0.515|GO:0003824_0.504
|
IPR001841+703-745_704-744_704-745+|IPR013083+678-752+
|
SM00184+704-744+
|
PF13639+703-745+Ring_finger_domain
|
— |
PTHR45969+632-765+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-84;304-362
|
2.000
|
85-303;363-786
|
1x4j_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
82395.030
|
6.523
|
0.500
|
14.885
|
7.125
|
48.219
|
51.781
|
8.397
|
6.489
|
62.723
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
2316.030
|
1206.760
|
1725.128
|
1332.764
|
1301.755
|
1710.682
|
1450.883
|
1537.772
|
600.108
|
5832.896
|
3590.273
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.287
|
— |
-0.264
|
— |
0.409
|
-0.228
|
— | — |
-3.402
|
— | — | — | — |
No JSON data available for plots.