Hg_chrom3_TN10mRNA_6001
Organism: Heterodera glycines Gene Locus: chr3:8443015-8446485 Feature type: polypeptideProtein Sequence
Length: 632
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.534 | 1.067 | 1.151 | 0.546 | 1.371 | 0.933 | 0.697 | 1.028 | 0.985 | 1.262 | 1.367 | 1.582 | 1.67 | 1.065 | 0.904 | 0.814 | 0.752 | 0.791 | 1.704 | 1.163 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5699
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-28
|
0.976
|
1.000
|
0.000
|
0.000
|
0.339
|
0.358
|
0.089
|
0.534
|
0.318
|
0.342
|
0.174
|
0.063
|
0.298
|
0.468
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000523
|
3.000
|
4.000
|
Hsc_gene_145.t1;Hsc_gene_19275.t1;Hsc_gene_22433.t1;Hsc_gene_26122.t1
|
— | — |
O43280.2 Trehalase [Homo sapiens]
|
KAI3420251.1 Trehalase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991
|
GO:0008150_0.855|GO:0005575_0.791|GO:0003674_0.788|GO:0110165_0.784|GO:0008152_0.709|GO:0003824_0.688|GO:0044238_0.647|GO:0016020_0.617|GO:0009056_0.614|GO:0016787_0.611|GO:0016798_0.568|GO:0004553_0.567|GO:0015927_0.562|GO:0005975_0.537|GO:0005984_0.527|GO:0005991_0.527|GO:0005993_0.527|GO:0009311_0.527|GO:0009313_0.527|GO:0016052_0.527|GO:0046352_0.527|GO:0071944_0.507|GO:0005886_0.506
|
IPR001661+68-616_122-603_248-266_316-333_351-368_506-522_586-599+|IPR008928+80-606+|IPR012341+77-622+|IPR018232+206-219+
|
— |
PF01204+122-603+Trehalase
|
— |
PTHR23403+68-616+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
624-632
|
1.000
|
1-623
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
73348.740
|
6.455
|
-0.500
|
30.063
|
14.241
|
48.576
|
51.424
|
15.506
|
14.557
|
43.987
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
201.284
|
58.462
|
97.454
|
110.904
|
354.218
|
464.091
|
585.221
|
443.199
|
50.919
|
49.849
|
50.308
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
0.787
|
0.296
|
1.644
|
0.405
|
0.346
|
— |
0.544
|
— | — | — | — | — |