Hg_chrom3_TN10mRNA_6002
Organism: Heterodera glycines Gene Locus: chr3:8443015-8446485 Feature type: polypeptideProtein Sequence
Length: 648
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.556 | 1.077 | 1.122 | 0.532 | 1.389 | 0.91 | 0.68 | 1.003 | 0.96 | 1.251 | 1.356 | 1.543 | 1.715 | 1.039 | 0.882 | 0.816 | 0.835 | 0.818 | 1.662 | 1.135 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5699
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-28
|
0.976
|
1.000
|
0.000
|
0.000
|
0.327
|
0.344
|
0.078
|
0.516
|
0.305
|
0.390
|
0.189
|
0.077
|
0.311
|
0.489
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000523
|
3.000
|
4.000
|
Hsc_gene_145.t1;Hsc_gene_19275.t1;Hsc_gene_22433.t1;Hsc_gene_26122.t1
|
— | — |
P19813.1 Trehalase [Oryctolagus cuniculus]
|
KAI3420251.1 Trehalase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991
|
GO:0008150_0.852|GO:0005575_0.794|GO:0110165_0.786|GO:0003674_0.784|GO:0008152_0.703|GO:0003824_0.687|GO:0044238_0.639|GO:0016020_0.617|GO:0009056_0.613|GO:0016787_0.609|GO:0016798_0.566|GO:0004553_0.565|GO:0015927_0.560|GO:0005975_0.536|GO:0005984_0.526|GO:0005991_0.526|GO:0005993_0.526|GO:0009311_0.526|GO:0009313_0.526|GO:0016052_0.526|GO:0046352_0.526|GO:0005886_0.514|GO:0071944_0.514
|
IPR001661+68-632_102-619_264-282_332-349_367-384_522-538_602-615+|IPR008928+80-622+|IPR012341+77-638+|IPR018232+222-235+
|
— |
PF01204+102-619+Trehalase
|
— |
PTHR23403+68-632+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
640-648
|
1.000
|
1-639
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
75088.690
|
6.340
|
-1.500
|
29.784
|
14.198
|
48.765
|
51.235
|
15.278
|
14.506
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
turquoise
|
201.284
|
58.462
|
97.454
|
110.904
|
354.218
|
464.091
|
585.221
|
443.199
|
50.919
|
49.849
|
50.308
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
0.787
|
0.296
|
1.644
|
0.405
|
0.346
|
— |
0.544
|
— | — | — | — | — |