Hg_chrom3_TN10mRNA_6003
Organism: Heterodera glycines Gene Locus: chr3:8447533-8451682 Feature type: polypeptideProtein Sequence
Length: 441
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.817 | 1.477 | 1.113 | 0.704 | 1.134 | 1.279 | 0.702 | 1.361 | 1.159 | 0.797 | 1.134 | 2.401 | 1.512 | 0.48 | 0.926 | 0.777 | 0.929 | 1.031 | 1.221 | 1.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5700
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — |
Hgg-32|AF345792.1#tn20jg20262.t1
|
Hgg-32|AF3457921#tn20jg20262t1
|
— |
Hsc_gene_146
|
— |
2-Not_Clustered
|
0.826
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-22
|
0.996
|
1.000
|
0.000
|
0.000
|
0.150
|
0.250
|
0.016
|
0.390
|
0.230
|
0.179
|
0.152
|
0.006
|
0.102
|
0.768
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007993
|
1.000
|
1.000
|
Hsc_gene_146.t1
|
Hsc_gene_146.t1
|
— |
P42665.1 Hemoglobinase [Schistosoma japonicum]
|
KAI1701628.1 peptidase c13 family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006508|GO:0008233
|
GO:0003674_0.817|GO:0005575_0.812|GO:0110165_0.810|GO:0003824_0.718|GO:0008150_0.694|GO:0005622_0.669|GO:0016020_0.652|GO:0016787_0.648|GO:0009987_0.630|GO:0140096_0.622|GO:0005737_0.614|GO:0043226_0.611|GO:0008233_0.608|GO:0043229_0.597|GO:0004175_0.594|GO:0043227_0.577|GO:0043231_0.570|GO:0004197_0.514|GO:0008234_0.514
|
IPR001096+1-441_19-432_35-59_35-300_60-89_107-122_187-203+|IPR046427+330-435+|IPR048501+341-432_342-432+
|
— |
PF01650+35-300+Peptidase_C13_family|PF20985+342-432+Legumain,_prodomain
|
G3DSA:3.40.50.1460:FF:000006+29-318+Legumain
|
PTHR12000+19-432+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
336-380
|
2.000
|
1-335;381-441
|
4noj_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.560
|
50476.300
|
6.765
|
2.000
|
27.664
|
13.152
|
50.113
|
49.887
|
14.739
|
12.925
|
47.846
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2248.512
|
206.127
|
1383.571
|
3362.050
|
3293.694
|
2799.522
|
4660.132
|
911.575
|
837.376
|
2977.957
|
2060.565
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.519
|
3.891
|
1.389
|
— |
-0.220
|
0.746
|
-1.727
|
2.498
|
— | — | — | — | — |