Hg_chrom3_TN10mRNA_6004
Organism: Heterodera glycines Gene Locus: chr3:8453376-8458921 Feature type: polypeptideProtein Sequence
Length: 787
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.65 | 1.005 | 0.785 | 0.745 | 0.805 | 1.075 | 1.15 | 1.906 | 0.762 | 1.116 | 0.963 | 1.196 | 1.306 | 1.197 | 1.789 | 1.271 | 0.896 | 0.481 | 2.053 | 0.336 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5701
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.694
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
RKKQR,RRRGKDEHGNGRRNGR,RRNGRDEDVNGRRHGR,RRGETFTGSTIKRPIRR,NGRRRGKDEHGNGRRNG,KKRVQPRKRRDNNKRGKS,RKIGHGDEDGNGRRRGKD,RKLRRGETFTGSTIKRPIR
|
11-36
|
0.995
|
23-44
|
0.994
|
— | — |
0.000
|
— | — |
0.207
|
0.229
|
0.019
|
0.368
|
0.232
|
0.283
|
0.229
|
0.007
|
0.499
|
0.253
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007994
|
1.000
|
1.000
|
Hsc_gene_147.t1
|
Hsc_gene_147.t1
|
— | — |
KAI3420247.1 TBCC domain-containing protein 1 [Globodera pallida]
|
No
|
-0.120
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR40288+73-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
288-787
|
1.000
|
1-287
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.876
|
88476.270
|
10.662
|
62.000
|
28.081
|
12.325
|
50.953
|
49.047
|
18.933
|
9.149
|
49.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1223.716
|
1593.029
|
2597.841
|
1236.649
|
1151.328
|
1093.944
|
410.358
|
1971.345
|
895.240
|
911.894
|
904.757
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.475
|
-0.503
|
-0.962
|
-0.136
|
— |
-1.405
|
0.753
|
-2.125
|
— | — | — | — | — |
No JSON data available for plots.