Hg_chrom3_TN10mRNA_6005
Organism: Heterodera glycines Gene Locus: chr3:8458954-8465771 Feature type: polypeptideProtein Sequence
Length: 1,202
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.054 | 0.948 | 0.908 | 0.947 | 1.234 | 1.216 | 0.644 | 1.373 | 1.239 | 1.349 | 0.908 | 2.104 | 1.155 | 0.544 | 1.053 | 0.915 | 0.696 | 0.895 | 1.536 | 0.881 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5702
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.801
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.357
|
0.079
|
0.019
|
0.519
|
0.209
|
0.412
|
0.216
|
0.024
|
0.238
|
0.061
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001216
|
3.000
|
2.000
|
Hsc_gene_148.t1;Hsc_gene_148.t2
|
Hsc_gene_148.t1;Hsc_gene_148.t2;Hsc_gene_148.t3;Hsc_gene_148.t4
|
— |
A6N6J5.1 WD repeat-containing protein 35 [Rattus norvegicus]
|
KAI3420246.1 WD repeat-containing protein 35 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0060271
|
GO:0008150_0.943|GO:0009987_0.888|GO:0005575_0.739|GO:0071840_0.737|GO:0016043_0.733|GO:0110165_0.732|GO:0006996_0.683|GO:0005622_0.654|GO:0016020_0.614|GO:0071944_0.597|GO:0005886_0.592|GO:0043226_0.554|GO:0051179_0.553|GO:0050896_0.544|GO:0006810_0.542|GO:0051234_0.542|GO:0043227_0.509
|
IPR001680+9-48_66-105_112-151_153-191+|IPR015943+16-369+|IPR017233+5-1202+|IPR024977+129-202+|IPR036322+23-353+|IPR039857+26-1197+
|
SM00320+9-48_66-105_112-151_153-191+
|
PF12894+129-202+Anaphase-promoting_complex_subunit_4_WD40_domain
|
— |
PTHR12764+26-1197+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1202
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
136312.640
|
6.575
|
1.500
|
26.290
|
11.897
|
45.757
|
54.243
|
13.894
|
12.396
|
45.674
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1097.732
|
1588.631
|
1920.196
|
821.255
|
409.109
|
256.780
|
616.789
|
658.289
|
1944.380
|
992.648
|
1400.533
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.089
|
-1.115
|
-1.036
|
-0.658
|
1.275
|
1.256
|
— | — | — | — | — | — |
No JSON data available for plots.