Hg_chrom3_TN10mRNA_6006
Organism: Heterodera glycines Gene Locus: chr3:8458954-8465771 Feature type: polypeptideProtein Sequence
Length: 1,234
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.027 | 0.98 | 0.899 | 0.922 | 1.202 | 1.247 | 0.675 | 1.418 | 1.207 | 1.347 | 0.921 | 2.05 | 1.171 | 0.545 | 1.075 | 0.903 | 0.717 | 0.896 | 1.496 | 0.858 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5702
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.801
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKSNEGITADRVKGKGR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.369
|
0.078
|
0.018
|
0.516
|
0.203
|
0.419
|
0.211
|
0.024
|
0.241
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001216
|
3.000
|
2.000
|
Hsc_gene_148.t1;Hsc_gene_148.t2
|
Hsc_gene_148.t1;Hsc_gene_148.t2;Hsc_gene_148.t3;Hsc_gene_148.t4
|
— |
A6N6J5.1 WD repeat-containing protein 35 [Rattus norvegicus]
|
KAI3420246.1 WD repeat-containing protein 35 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0060271
|
GO:0008150_0.943|GO:0009987_0.890|GO:0071840_0.737|GO:0005575_0.736|GO:0016043_0.731|GO:0110165_0.728|GO:0006996_0.681|GO:0005622_0.650|GO:0016020_0.613|GO:0071944_0.587|GO:0005886_0.582|GO:0043226_0.556|GO:0050896_0.550|GO:0051179_0.547|GO:0006810_0.534|GO:0051234_0.534|GO:0043227_0.507
|
IPR001680+9-48_66-105_112-151_153-191+|IPR015943+16-369+|IPR017233+5-1234+|IPR024977+129-202+|IPR036322+23-353+|IPR039857+26-1229+
|
SM00320+9-48_66-105_112-151_153-191+
|
PF12894+129-202+Anaphase-promoting_complex_subunit_4_WD40_domain
|
— |
PTHR12764+26-1229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
493-542
|
2.000
|
1-492;543-1234
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
139886.670
|
6.855
|
7.500
|
26.337
|
11.912
|
46.110
|
53.890
|
14.182
|
12.156
|
45.786
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1097.732
|
1588.631
|
1920.196
|
821.255
|
409.109
|
256.780
|
616.789
|
658.289
|
1944.380
|
992.648
|
1400.533
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.089
|
-1.115
|
-1.036
|
-0.658
|
1.275
|
1.256
|
— | — | — | — | — | — |
No JSON data available for plots.