Hg_chrom3_TN10mRNA_6011
Organism: Heterodera glycines Gene Locus: chr3:8480826-8485508 Feature type: polypeptideProtein Sequence
Length: 679
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.199 | 1.302 | 0.75 | 0.406 | 0.982 | 1.435 | 0.631 | 0.736 | 0.556 | 0.935 | 0.781 | 1.04 | 0.655 | 1.841 | 0.932 | 1.662 | 1.086 | 1.272 | 0.227 | 0.217 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5705
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.152
|
0.154
|
0.008
|
0.779
|
0.217
|
0.247
|
0.403
|
0.131
|
0.365
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007995
|
1.000
|
1.000
|
Hsc_gene_153.t1
|
Hsc_gene_153.t1
|
— |
Q96B97.2 SH3 domain-containing kinase-binding protein 1 [Homo sapiens]
|
KAI3420241.1 SH3-domain kinase binding protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.928|GO:0110165_0.924|GO:0008150_0.862|GO:0005622_0.832|GO:0009987_0.814|GO:0016020_0.719|GO:0065007_0.666|GO:0050789_0.653|GO:0043226_0.648|GO:0050794_0.645|GO:0003674_0.634|GO:0005488_0.612|GO:0005737_0.563|GO:0071840_0.555|GO:0016043_0.554|GO:0005515_0.548|GO:0043229_0.544|GO:0043227_0.541
|
IPR001452+89-157_92-156_96-152_266-327_269-279_269-326_273-322_283-298_313-325+|IPR036028+87-174_265-343+|IPR050384+79-152+
|
SM00326+92-156_269-326+
|
PF14604+96-152_273-322+Variant_SH3_domain
|
— |
PTHR14167+79-152+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-277;364-679
|
1.000
|
278-363
|
2k6d_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
71915.530
|
6.996
|
3.000
|
21.208
|
4.860
|
50.663
|
49.337
|
11.193
|
10.015
|
62.739
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
1142.661
|
1746.868
|
951.595
|
1012.106
|
1271.819
|
1430.194
|
3405.809
|
986.239
|
190.753
|
804.340
|
541.374
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.106
|
-0.925
|
0.198
|
0.298
|
0.184
|
1.263
|
-0.641
|
1.931
|
— | — | — | — | — |
No JSON data available for plots.