Hg_chrom3_TN10mRNA_6016
Organism: Heterodera glycines Gene Locus: chr3:8496349-8497861 Feature type: polypeptideProtein Sequence
Length: 272
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.94 | 0.94 | 0.936 | 0.254 | 1.348 | 0.848 | 0.657 | 1.103 | 0.98 | 1.093 | 1.058 | 0.649 | 2.349 | 0.778 | 0.825 | 1.261 | 0.844 | 1.114 | 0.283 | 1.189 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5709
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-Not_Clustered
|
0.453
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum|golgi_apparatus
|
— | — | — | — | — | — |
1-23
|
0.966
|
0.986
|
1.000
|
1.000
|
0.098
|
0.132
|
0.014
|
0.158
|
0.964
|
0.382
|
0.741
|
0.137
|
0.174
|
0.004
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007997
|
1.000
|
1.000
|
Hsc_gene_158.t1
|
Hsc_gene_158.t1
|
— |
Q9CY50.1 Translocon-associated protein subunit alpha [Mus musculus]
|
KAH7698803.1 translocon-associated protein alpha [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005789
|
GO:0005575_0.924|GO:0110165_0.921|GO:0016020_0.861|GO:0005622_0.809|GO:0005737_0.809|GO:0043226_0.770|GO:0043229_0.767|GO:0043227_0.753|GO:0043231_0.739|GO:0071944_0.734|GO:0005886_0.721|GO:0005773_0.592|GO:0012505_0.580|GO:0005783_0.506
|
IPR005595+72-250+
|
— |
PF03896+72-250+Translocon-associated_protein_(TRAP),_alpha_subunit
|
— |
PTHR12924+8-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
248-272
|
1.000
|
1-247
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.550
|
30643.610
|
5.678
|
-3.000
|
26.471
|
15.074
|
47.794
|
52.206
|
13.235
|
13.235
|
48.897
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
3862.673
|
2038.857
|
1773.287
|
3201.115
|
4632.990
|
5205.360
|
2671.740
|
2216.002
|
7426.742
|
3176.881
|
4998.250
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.431
|
0.514
|
0.961
|
0.501
|
— |
-0.953
|
-1.329
|
— | — | — | — | — | — |