SCN Proteipedia

Hg_chrom3_TN10mRNA_6017

Organism: Heterodera glycines Gene Locus: chr3:8498265-8501470 Feature type: polypeptide

Protein Sequence

Length: 770

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.042	0.664	1.228	0.537	0.996	1.532	0.742	0.974	1.472	1.053	0.885	1.375	1.118	0.799	1.643	0.946	0.724	1.082	0.1	0.764	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5710	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.994

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KKAIACLLFGGSRKRLP	—	—	—	—	—	—	0.000	—	—	0.728	0.154	0.024	0.410	0.084	0.127	0.066	0.016	0.089	0.025

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007998	1.000	1.000	Hsc_gene_159.t1	Hsc_gene_159.t1	—	Q21902.1 DNA replication licensing factor mcm-5 [Caenorhabditis elegans]	KAI3420239.1 minichromosome maintenance protein 5 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003677\|GO:0003688\|GO:0005524\|GO:0005634\|GO:0006260\|GO:0006270\|GO:0016887\|GO:0032508\|GO:0042555	GO:0008150_0.913\|GO:0005575_0.874\|GO:0009987_0.838\|GO:0110165_0.832\|GO:0005622_0.779\|GO:0008152_0.763\|GO:0044237_0.742\|GO:0016020_0.739\|GO:0044238_0.738\|GO:0009058_0.730\|GO:0043170_0.716\|GO:0043226_0.712\|GO:0044249_0.712\|GO:0043229_0.692\|GO:0006139_0.689\|GO:0009059_0.689\|GO:0034654_0.670\|GO:0090304_0.670\|GO:0071840_0.663\|GO:0043227_0.661\|GO:0141187_0.660\|GO:0016043_0.657\|GO:0043231_0.646\|GO:0006259_0.633\|GO:0071897_0.629\|GO:0006260_0.624\|GO:0006996_0.612\|GO:0006261_0.603\|GO:0032991_0.595\|GO:0005634_0.562	IPR001208+329-550_341-546_382-397_442-456_470-483_494-506_520-528+\|IPR003593+383-534+\|IPR008048+141-156_167-179_300-312_596-611_678-695+\|IPR012340+42-287_140-278+\|IPR018525+450-458+\|IPR027417+322-697_351-683+\|IPR027925+42-129+\|IPR031327+35-748_136-685+\|IPR033762+140-278+\|IPR041562+587-683+\|IPR054125+710-768+	SM00350+136-685+\|SM00382+383-534+	PF00493+329-550+MCM_P-loop_domain\|PF14551+42-129+MCM_N-terminal_domain\|PF17207+140-278+MCM_OB_domain\|PF17855+587-683+MCM_AAA-lid_domain\|PF21933+710-768+MCM5,_C-terminal_domain	G3DSA:3.30.1640.10:FF:000006+33-133+DNA_helicase\|G3DSA:3.40.50.300:FF:000929+322-697+DNA_helicase	PTHR11630+35-748+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-770	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.692	86108.360	8.665	16.500	28.571	8.701	48.442	51.558	15.844	12.727	48.701

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	565.957	263.594	262.943	844.142	1231.984	792.308	1513.723	239.180	22.453	528.771	311.777

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.236	1.542	1.793	0.513	-0.622	0.945	-1.842	2.808	-4.704	5.447	—	—	—

No JSON data available for plots.

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