Hg_chrom3_TN10mRNA_6018
Organism: Heterodera glycines Gene Locus: chr3:8501970-8507659 Feature type: polypeptideProtein Sequence
Length: 1,118
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.822 | 0.832 | 0.781 | 0.401 | 1.163 | 1.56 | 0.724 | 1.655 | 0.775 | 1.45 | 0.556 | 1.947 | 1.019 | 1.514 | 1.57 | 1.176 | 0.894 | 0.61 | 1.032 | 0.579 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5711
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KREYPPSYGQNEDNRRGRW,RKSSTGEAQQPPPPKRPKR,RRGRWERGSNGRRARRGGPGGGRP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.822
|
0.079
|
0.003
|
0.456
|
0.067
|
0.068
|
0.095
|
0.015
|
0.049
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007999
|
1.000
|
1.000
|
Hsc_gene_160.t1
|
Hsc_gene_160.t1
|
— | — |
KAF7638699.1 DUF1768 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR012816+31-197_235-410_235-412_445-626+|IPR037238+7-197_14-203_224-419_233-412_432-633_435-629+
|
— |
PF08719+235-412+NADAR_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
777-1118
|
1.000
|
1-776
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.804
|
125936.980
|
7.778
|
19.500
|
25.939
|
10.286
|
49.284
|
50.716
|
14.669
|
11.270
|
47.764
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1285.075
|
1636.397
|
1657.508
|
1835.671
|
1893.189
|
1630.474
|
2285.799
|
1492.529
|
917.859
|
271.970
|
548.779
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.212
|
— |
0.257
|
— |
-0.201
|
0.497
|
-0.234
|
0.758
|
— | — |
3.348
|
— | — |
No JSON data available for plots.