Hg_chrom3_TN10mRNA_6020
Organism: Heterodera glycines Gene Locus: chr3:8512041-8513331 Feature type: polypeptideProtein Sequence
Length: 292
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.717 | 0.478 | 0.374 | 0.354 | 0.913 | 0.439 | 0.897 | 1.199 | 0.609 | 0.463 | 0.726 | 1.41 | 0.571 | 2.239 | 3.914 | 2.495 | 0.618 | 0.467 | 0.0 | 0.302 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5713
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRRR,NNGRFRSRSPRR,RRRRPSPPSRGPRRRSRS,RRFAARLSPPRRGRRSRS,KKQRAAARPSARDDRTTRR
|
4-45
|
0.943
|
— | — | — | — |
0.000
|
— | — |
0.946
|
0.108
|
0.007
|
0.104
|
0.032
|
0.018
|
0.035
|
0.002
|
0.057
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0008001
|
1.000
|
1.000
|
Hsc_gene_162.t1
|
Hsc_gene_162.t1
|
— |
Q6PG31.1 RNA-binding protein with serine-rich domain 1 [Danio rerio]
|
KAH7695847.1 Rnp [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.919|GO:0110165_0.919|GO:0005622_0.825|GO:0008150_0.821|GO:0016020_0.814|GO:0043226_0.802|GO:0043229_0.786|GO:0043227_0.740|GO:0043231_0.726|GO:0005634_0.719|GO:0009987_0.699|GO:0065007_0.645|GO:0008152_0.644|GO:0009058_0.644|GO:0009059_0.644|GO:0010467_0.644|GO:0043170_0.644|GO:0044237_0.644|GO:0044249_0.644|GO:0050789_0.627|GO:0003674_0.610|GO:0005488_0.610|GO:0003676_0.602|GO:0097159_0.602|GO:0006139_0.584|GO:0044238_0.584|GO:0090304_0.584|GO:0016070_0.582|GO:0050794_0.565|GO:0003723_0.532|GO:0019222_0.511|GO:0031323_0.511|GO:0060255_0.507
|
IPR000504+137-216_138-212_139-209+|IPR012677+112-284+|IPR034201+141-209+|IPR035979+124-231+
|
SM00360+138-212+
|
PF00076+139-209+RNA_recognition_motif
|
— |
PTHR15481+6-288+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-292
|
0.000
|
— |
4a8x_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
32519.680
|
12.478
|
51.500
|
33.904
|
5.479
|
58.904
|
41.096
|
26.370
|
7.534
|
54.795
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
1861.159
|
2513.549
|
1768.488
|
2862.286
|
2953.257
|
2331.056
|
1791.747
|
1249.751
|
729.957
|
1793.803
|
1337.869
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.738
|
— |
0.804
|
— |
-0.326
|
-0.370
|
-1.004
|
0.662
|
-1.405
|
2.144
|
— | — | — |
No JSON data available for plots.