Hg_chrom3_TN10mRNA_6022
Organism: Heterodera glycines Gene Locus: chr3:8517595-8521616 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.816 | 0.788 | 1.101 | 0.668 | 0.969 | 1.49 | 0.605 | 0.847 | 1.345 | 1.243 | 0.917 | 2.706 | 1.883 | 0.605 | 1.384 | 1.107 | 0.873 | 0.697 | 0.745 | 0.57 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5715
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRGLEMVQQGEVRFRKSRA
|
1-41
|
0.999
|
26-87
|
0.958
|
— | — |
0.000
|
— | — |
0.199
|
0.928
|
0.061
|
0.302
|
0.165
|
0.085
|
0.099
|
0.163
|
0.074
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003641
|
1.000
|
2.000
|
Hsc_gene_164.t1;Hsc_gene_164.t2
|
Hsc_gene_164.t1;Hsc_gene_164.t2;Hsc_gene_48.t1
|
— |
Q8NAN2.1 Mitoguardin 1 [Homo sapiens]
|
KAH7720093.1 Protein K01D12.6 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008053
|
GO:0008150_0.911|GO:0009987_0.868|GO:0071840_0.727|GO:0016043_0.721|GO:0005575_0.711|GO:0110165_0.710|GO:0006996_0.679|GO:0016020_0.646|GO:0048284_0.639|GO:0007005_0.636|GO:0008053_0.632|GO:0003674_0.575|GO:0005622_0.553|GO:0005488_0.516|GO:0043226_0.503
|
IPR019392+136-393+
|
— |
PF10265+136-393+Mitoguardin
|
— |
PTHR21508+133-396+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
80-141
|
2.000
|
1-79;142-413
|
8edv_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
47238.430
|
8.290
|
7.500
|
26.392
|
11.380
|
48.668
|
51.332
|
14.528
|
11.864
|
44.310
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
194.841
|
63.897
|
128.906
|
89.830
|
80.752
|
83.116
|
229.417
|
304.374
|
126.510
|
389.937
|
277.040
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.786
|
0.354
|
-0.415
|
— | — |
1.476
|
1.769
|
— | — | — |
-1.914
|
— | — |
No JSON data available for plots.