Hg_chrom3_TN10mRNA_6028
Organism: Heterodera glycines Gene Locus: chr3:8547499-8549003 Feature type: polypeptideProtein Sequence
Length: 143
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.813 | 1.464 | 1.144 | 0.241 | 0.466 | 0.897 | 0.749 | 0.699 | 1.399 | 1.04 | 0.954 | 2.879 | 2.525 | 0.672 | 1.284 | 1.598 | 1.032 | 0.318 | 0.538 | 0.411 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5721
|
— | — |
1.444
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
17-37
|
1.000
|
35-96
|
0.930
|
— | — |
0.000
|
— | — |
0.121
|
0.836
|
0.096
|
0.202
|
0.202
|
0.072
|
0.162
|
0.089
|
0.085
|
0.135
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001970
|
3.000
|
1.000
|
Hsc_gene_48.t1
|
Hsc_gene_164.t1;Hsc_gene_164.t2;Hsc_gene_48.t1
|
— |
P54813.2 ATP-dependent zinc metalloprotease YME1 homolog [Caenorhabditis elegans]
|
XP_050426443.1 ATP-dependent zinc metalloprotease YME1L [Adelges cooleyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.880|GO:0110165_0.875|GO:0016020_0.783|GO:0005622_0.765|GO:0008150_0.758|GO:0043226_0.705|GO:0043229_0.705|GO:0005737_0.681|GO:0043227_0.653|GO:0043231_0.653|GO:0009987_0.560|GO:0008152_0.503
|
IPR003959+88-141+|IPR027417+62-142+
|
— |
PF00004+88-141+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
— |
PTHR23076+88-141+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-143
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.926
|
16092.370
|
10.212
|
6.000
|
23.077
|
12.587
|
50.350
|
49.650
|
13.986
|
9.091
|
49.650
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
cyan
|
36.662
|
41.199
|
81.453
|
44.951
|
42.001
|
40.836
|
63.499
|
83.641
|
0.000
|
11.302
|
6.458
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.754
|
— |
-0.750
|
— | — |
0.648
|
0.930
|
— | — |
6.347
|
— | — | — |
No JSON data available for plots.