SCN Proteipedia

Hg_chrom3_TN10mRNA_6029

Organism: Heterodera glycines Gene Locus: chr3:8553887-8558310 Feature type: polypeptide

Protein Sequence

Length: 899

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.802	1.423	1.092	0.767	1.52	0.941	0.636	0.834	0.816	1.082	1.011	2.028	1.73	0.898	1.612	0.62	0.784	0.758	0.856	0.916	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_5722	—	—	1.111	1.000	1.000	1.000	1.000	1.000	2.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Eggs_Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	KVKK,RRAIFERNPNKGRRG,RRLIGISETAKKEER,KKEERTEEQLKRAQK,KKYLMEVNKRMESMDRKKE	—	—	—	—	—	—	0.000	—	—	0.618	0.163	0.028	0.557	0.059	0.111	0.077	0.010	0.128	0.037

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003642	2.000	1.000	Hsc_gene_166.t1	Hsc_gene_166.t1	—	A8XYX2.2 Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1A [Caenorhabditis briggsae]	KAI1724059.1 ftsJ-like methyltransferase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0008168\|GO:0032259	GO:0008150_0.904\|GO:0009987_0.855\|GO:0005575_0.836\|GO:0110165_0.832\|GO:0003674_0.816\|GO:0005622_0.779\|GO:0008152_0.736\|GO:0016020_0.715\|GO:0044238_0.715\|GO:0044237_0.706\|GO:0009058_0.699\|GO:0043226_0.696\|GO:0043170_0.694\|GO:0044249_0.682\|GO:0043229_0.678\|GO:0009059_0.640\|GO:0003824_0.636\|GO:0006139_0.630\|GO:0010467_0.628\|GO:0043227_0.622\|GO:0090304_0.613\|GO:0034654_0.611\|GO:0141187_0.604\|GO:0016070_0.603\|GO:0032774_0.598\|GO:0043231_0.596\|GO:0016740_0.581\|GO:0016071_0.576\|GO:0006396_0.552\|GO:0006397_0.547\|GO:0005634_0.531\|GO:0000966_0.516\|GO:0006370_0.516\|GO:0009452_0.516\|GO:0036260_0.516\|GO:0140640_0.513\|GO:0140098_0.508\|GO:0008168_0.505\|GO:0008757_0.505\|GO:0016741_0.505\|GO:0004483_0.501\|GO:0008171_0.501\|GO:0008173_0.501\|GO:0008174_0.501	IPR000467+9-55_11-57_12-55+\|IPR002877+163-404+\|IPR025816+161-406+\|IPR029063+143-414+\|IPR050851+12-333+	SM00443+9-55+	PF01585+12-55+G-patch_domain\|PF01728+163-404+FtsJ-like_methyltransferase	—	PTHR16121+12-333+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-38;862-899	1.000	39-861	8w8f_b	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.597	104274.420	6.765	2.500	31.368	12.125	50.278	49.722	16.240	15.128	45.384

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	blue	1902.990	1687.674	1492.768	1412.143	1557.581	1619.746	1826.469	1575.833	1701.501	2859.874	2363.428

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.406	-0.394	—	0.110	—	0.185	—	0.356	—	—	—	—	—

No JSON data available for plots.

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